RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PLK5Q496M5 336 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 CCSMST1Q4G0I0 132 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 THEMIS2Q5TEJ8 643 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 CAPN13Q6MZZ7 669 aaPredicted RBP16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 CGB2Q6NT52 195 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 ABRAXAS1Q6UWZ7 409 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 EFL1Q7Z2Z2 1120 aaKnown RBP16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 GKN2Q86XP6 184 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 LSMEM2Q8N112 164 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 CCL4L1Q8NHW4 92 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 SEC16BQ96JE7 1060 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 ZNF382Q96SR6 550 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 TCEAL2Q9H3H9 227 aaPredicted RBP16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 NOL11Q9H8H0 719 aaKnown RBP16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 IPPKQ9H8X2 491 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 TAAR2Q9P1P5 351 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 ARL2BPQ9Y2Y0 163 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 USH1CQ9Y6N9 552 aa16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 TNRC6BQ9UPQ9 1833 aaKnown RBP16.64■□□□□ 0.25
CCDC28B-202ENST00000421922 OR5K4A6NMS3 321 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 CCND1P24385 295 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 SLC6A12P48065 614 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 AQP5P55064 265 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 C1orf61Q13536 156 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 ARHGAP19Q14CB8 494 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 RABEPKQ7Z6M1 372 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 PIGWQ7Z7B1 504 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 SPATS2Q86XZ4 545 aaKnown RBP16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 MYLK4Q86YV6 388 aaPredicted RBP16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 HOMEZQ8IX15 550 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 C1orf216Q8TAB5 229 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 LMX1AQ8TE12 382 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 AGAP11Q8TF27 550 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 CCT6BQ92526 530 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 PIGKQ92643 395 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 PYCR2Q96C36 320 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 PHOX2BQ99453 314 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 LRRC61Q9BV99 259 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 CCDC177Q9NQR7 707 aaPredicted RBP16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 ZDHHC2Q9UIJ5 367 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 HAO1Q9UJM8 370 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 PCOLCE2Q9UKZ9 415 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 PLAGL1Q9UM63 463 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 DYRK1BQ9Y463 629 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 ASB1Q9Y576 335 aa16.63■□□□□ 0.25
CCDC28B-202ENST00000421922 A0A1B0GVT2 93 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 TRPC5OSA6NMA1 111 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 CLGNO14967 610 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 AZIN1O14977 448 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 HDAC3O15379 428 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 ESRRBO95718 433 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 SP9P0CG40 484 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 TBPL1P62380 186 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 CDC16Q13042 620 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 SIM2Q14190 667 aaPredicted RBP16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 ANGPT1Q15389 498 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 PRR23BQ6ZRT6 265 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 MILR1Q7Z6M3 343 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 THOC6Q86W42 341 aaKnown RBP16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 NRROSQ86YC3 692 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 CLYBLQ8N0X4 340 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 PPFIBP2Q8ND30 876 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 RFWD2Q8NHY2 731 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 ZNF480Q8WV37 535 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 SH3KBP1Q96B97 665 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 MAGEB10Q96LZ2 347 aaPredicted RBP16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 CAMK1GQ96NX5 476 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 TMEM120AQ9BXJ8 343 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 STN1Q9H668 368 aaKnown RBP16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 ACTR8Q9H981 624 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 PRM3Q9NNZ6 103 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 PFDN4Q9NQP4 134 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 KCNK4Q9NYG8 393 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 KLF15Q9UIH9 416 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 APOBEC2Q9Y235 224 aaKnown RBP16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 SLC22A14Q9Y267 594 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 TRAF6Q9Y4K3 522 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 KIR2DS5A0A0G2JLQ3 304 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 A0A0G2JNG1 304 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 KIR2DS3K7RE56 304 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 HGSO14964 777 aaPredicted RBP16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 HRO43593 1189 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 DIAPH2O60879 1101 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 VIPP01282 170 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 ENO1P06733 434 aaKnown RBP16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 HMOX2P30519 316 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 BIRC2Q13490 618 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 KIR2DS5Q14953 304 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 PLCL1Q15111 1095 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 PDCD2Q16342 344 aaPredicted RBP16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 FAM46DQ8NEK8 389 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 OR56A3Q8NH54 315 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 RILPQ96NA2 401 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 IL17FQ96PD4 163 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 MIPEPQ99797 713 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 ZBTB26Q9HCK0 441 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 ST14Q9Y5Y6 855 aa16.62■□□□□ 0.25
CCDC28B-202ENST00000421922 B4DGG1 531 aa16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 UBFD1O14562 309 aaKnown RBP16.61■□□□□ 0.25
CCDC28B-202ENST00000421922 SKAP2O75563 359 aaPredicted RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms