RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 AP3M1Q9Y2T2 418 aa14.47□□□□□ -0.09
USP4-203ENST00000415188 COMMD3-BMI1R4GMX3 469 aa14.47□□□□□ -0.09
USP4-203ENST00000415188 EML5Q05BV3 1969 aa14.47□□□□□ -0.09
USP4-203ENST00000415188 ANKRD12Q6UB98 2062 aa14.47□□□□□ -0.09
USP4-203ENST00000415188 NCOR2Q9Y618 2525 aa14.47□□□□□ -0.09
USP4-203ENST00000415188 ASPDHA6ND91 283 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 IQCF5A8MTL0 148 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 OR7A17O14581 309 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 MAP3K13O43283 966 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 SMAD6O43541 496 aaKnown RBP14.46□□□□□ -0.09
USP4-203ENST00000415188 RGS14O43566 566 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 AKAP10O43572 662 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 KAT7O95251 611 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 SLC25A14O95258 325 aaPredicted RBP14.46□□□□□ -0.09
USP4-203ENST00000415188 CLPTM1O96005 669 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 JAK1P23458 1154 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 PEX19P40855 299 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 GRIA2P42262 883 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 NSG1P42857 185 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 DGKEP52429 567 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 MYBPC1Q00872 1141 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 APOFQ13790 326 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 MAP7Q14244 749 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 CAPRIN1Q14444 709 aaKnown RBP14.46□□□□□ -0.09
USP4-203ENST00000415188 SF3A2Q15428 464 aaKnown RBP14.46□□□□□ -0.09
USP4-203ENST00000415188 CNPY1Q3B7I2 92 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 FBXO48Q5FWF7 155 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 IL27RAQ6UWB1 636 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 ZBTB49Q6ZSB9 765 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 USP45Q70EL2 814 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 MILR1Q7Z6M3 343 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 CARM1Q86X55 608 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 HID1Q8IV36 788 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 ADGRG5Q8IZF4 528 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 TCAIMQ8N3R3 496 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 SFRP1Q8N474 314 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 AADATQ8N5Z0 425 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 NAT16Q8N8M0 369 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 TRPV3Q8NET8 790 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 TSTD1Q8NFU3 115 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 OR4F6Q8NGB9 312 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 ACOX2Q99424 681 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 ZBTB18Q99592 522 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 HAUS8Q9BT25 410 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 C9orf16Q9BUW7 83 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 CPEB1Q9BZB8 566 aaKnown RBP14.46□□□□□ -0.09
USP4-203ENST00000415188 TPSD1Q9BZJ3 242 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 SMOC1Q9H4F8 434 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 ZDHHC4Q9NPG8 344 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 AGPAT4Q9NRZ5 378 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 ZDHHC3Q9NYG2 299 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 WWOXQ9NZC7 414 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 HS3ST2Q9Y278 367 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 ASB1Q9Y576 335 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 ANGPTL3Q9Y5C1 460 aa14.46□□□□□ -0.09
USP4-203ENST00000415188 PLXNB3Q9ULL4 1909 aa14.46□□□□□ -0.1
USP4-203ENST00000415188 SPTBN2O15020 2390 aa14.46□□□□□ -0.1
USP4-203ENST00000415188 LSM1O15116 133 aaKnown RBP14.45□□□□□ -0.1
USP4-203ENST00000415188 EPN2O95208 641 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 CLDN7O95471 211 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 APODP05090 189 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 SDHBP21912 280 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 TIE1P35590 1138 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 LIPEQ05469 1076 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 PTPRRQ15256 657 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 NR6A1Q15406 480 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 CHRNA6Q15825 494 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 PLK5Q496M5 336 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 PITRM1Q5JRX3 1037 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 FAM219BQ5XKK7 198 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 TMEM25Q86YD3 366 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 TBC1D21Q8IYX1 336 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 GLB1L3Q8NCI6 653 aaPredicted RBP14.45□□□□□ -0.1
USP4-203ENST00000415188 PROKR1Q8TCW9 393 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 NAT14Q8WUY8 206 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 ECHDC3Q96DC8 303 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 CENPNQ96H22 339 aaPredicted RBP14.45□□□□□ -0.1
USP4-203ENST00000415188 LMLNQ96KR4 655 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 ZNF641Q96N77 438 aaPredicted RBP14.45□□□□□ -0.1
USP4-203ENST00000415188 MCCC1Q96RQ3 725 aaPredicted RBP14.45□□□□□ -0.1
USP4-203ENST00000415188 C1orf50Q9BV19 199 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 NTMT1Q9BV86 223 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 ANKRD60Q9BZ19 345 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 CD244Q9BZW8 370 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 TRIM4Q9C037 500 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 DUSP15Q9H1R2 295 aaPredicted RBP14.45□□□□□ -0.1
USP4-203ENST00000415188 SEMA6AQ9H2E6 1030 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 IPPKQ9H8X2 491 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 VCX3AQ9NNX9 186 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 PNPLA3Q9NST1 481 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 OPTCQ9UBM4 332 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 EBF1Q9UH73 591 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 MAGEL2Q9UJ55 1249 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 ANAPC2Q9UJX6 822 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 MMP17Q9ULZ9 603 aa14.45□□□□□ -0.1
USP4-203ENST00000415188 EIF3LQ9Y262 564 aaKnown RBP14.45□□□□□ -0.1
USP4-203ENST00000415188 RALGAPA1Q6GYQ0 2036 aa14.44□□□□□ -0.1
USP4-203ENST00000415188 C7orf72A4D263 438 aa14.44□□□□□ -0.1
USP4-203ENST00000415188 K7EPI3 171 aa14.44□□□□□ -0.1
USP4-203ENST00000415188 TAPBPO15533 448 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms