RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 SNX7Q9UNH6 387 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 FARSAQ9Y285 508 aaKnown RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 PADI2Q9Y2J8 665 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 CFAP20Q9Y6A4 193 aaKnown RBP6.18□□□□□ -1.42
USP54-202ENST00000413442 TEX264Q9Y6I9 313 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 PRSS21Q9Y6M0 314 aa6.18□□□□□ -1.42
USP54-202ENST00000413442 USP24Q9UPU5 2620 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 FRYQ5TBA9 3013 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 MYO1CO00159 1063 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 MEN1O00255 615 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 PRPF4O43172 522 aaKnown RBP eCLIP6.17□□□□□ -1.42
USP54-202ENST00000413442 KIF1CO43896 1103 aaKnown RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 CREG1O75629 220 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 KIAA0754O94854 1291 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 CYC1P08574 325 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 ENO2P09104 434 aaPredicted RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 ERGP11308 486 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 FOLR1P15328 257 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 UGT2B7P16662 529 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 CYP2A7P20853 494 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 PTPN4P29074 926 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 CMPK1P30085 196 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 PKLRP30613 574 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 CLCN7P51798 805 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 AP1S2P56377 157 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 IL2P60568 153 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 PRDX1Q06830 199 aaKnown RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 MGAT5Q09328 741 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 SSPNQ14714 243 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 GRM7Q14831 915 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 CRYMQ14894 314 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 TGIF1Q15583 401 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 SF1Q15637 639 aaKnown RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 WHAMMP3Q1A5X7 153 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 KLHL38Q2WGJ6 581 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 TAF1BQ53T94 588 aaPredicted RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 HSP90AA5PQ58FG0 334 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 CDKL4Q5MAI5 379 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 TEDDM1Q5T9Z0 273 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 GARNL3Q5VVW2 1013 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 ANKRD22Q5VYY1 191 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 STEAP4Q687X5 459 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 ZNF470Q6ECI4 717 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 FAM45BPQ6NSW5 357 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 RHBDD2Q6NTF9 364 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 TIPARPQ7Z3E1 657 aaKnown RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 APLFQ8IW19 511 aaPredicted RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 KLHL7Q8IXQ5 586 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 DNAJC22Q8N4W6 341 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 NKAPQ8N5F7 415 aaKnown RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 LILRA3Q8N6C8 439 aaPredicted RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 C19orf47Q8N9M1 422 aaKnown RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 C7orf57Q8NEG2 295 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 FAM45AQ8TCE6 357 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 PYROXD1Q8WU10 500 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 SKA2Q8WVK7 121 aaPredicted RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 TTC9Q92623 222 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 CLIP3Q96DZ5 547 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 MVB12AQ96EY5 273 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 NAF1Q96HR8 494 aaKnown RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 CCDC138Q96M89 665 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 CTRCQ99895 268 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 AARSD1Q9BTE6 412 aaKnown RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 NDC1Q9BTX1 674 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 MENTQ9BUN1 341 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 CLK4Q9HAZ1 481 aaKnown RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 CPNE5Q9HCH3 593 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 GEMIN8Q9NWZ8 242 aaKnown RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 MOCS1Q9NZB8 636 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 CDC23Q9UJX2 597 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 G3BP2Q9UN86 482 aaKnown RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 CDC14AQ9UNH5 594 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 NOVA2Q9UNW9 492 aaKnown RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 ICKQ9UPZ9 632 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 CRYL1Q9Y2S2 319 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 TDRKHQ9Y2W6 561 aaKnown RBP6.17□□□□□ -1.42
USP54-202ENST00000413442 VWA7Q9Y334 891 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 PCDHGA4Q9Y5G9 962 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 EPG5Q9HCE0 2579 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 APC2O95996 2303 aa6.17□□□□□ -1.42
USP54-202ENST00000413442 KCNE1BA0A087WTH5 132 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 LOC101059948A0A1B0GTJ6 334 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 FITM1A5D6W6 292 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 USP27XA6NNY8 438 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 C9J4A7 227 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 GOLGA8MH3BSY2 632 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 TERTO14746 1132 aaKnown RBP6.16□□□□□ -1.42
USP54-202ENST00000413442 CASC3O15234 703 aaKnown RBP6.16□□□□□ -1.42
USP54-202ENST00000413442 TTI1O43156 1089 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 OR2B3O76000 313 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 HAUS5O94927 633 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 AHSGP02765 367 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 EBLN1P0CF75 366 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 PRSS56P0CW18 603 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 TPBGLP0DKB5 382 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 LIFP15018 202 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 ST6GAL1P15907 406 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 VARSP26640 1264 aaKnown RBP6.16□□□□□ -1.42
USP54-202ENST00000413442 DLSTP36957 453 aa6.16□□□□□ -1.42
USP54-202ENST00000413442 SLC26A3P40879 764 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms