RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 ZNF317Q96PQ6 595 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-211ENST00000413186 TXLNGYQ9BZA5 131 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 OXSMQ9NWU1 459 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 ADGRE2Q9UHX3 823 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 EIF2B4Q9UI10 523 aaKnown RBP8.33□□□□□ -1.08
SYNE1-211ENST00000413186 ZNF490Q9ULM2 529 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-211ENST00000413186 DNMT3AQ9Y6K1 912 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-211ENST00000413186 NPIPA7E9PJI5 369 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 PROCP04070 461 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 NPIPA8P0DM63 369 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 ADRA1AP35348 466 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 FEN1P39748 380 aaKnown RBP8.33□□□□□ -1.08
SYNE1-211ENST00000413186 DUSP3P51452 185 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-211ENST00000413186 XIAPP98170 497 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 RPA4Q13156 261 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 CYP51A1Q16850 503 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 HMBOX1Q6NT76 420 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 SYCE2Q6PIF2 218 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 PACS2Q86VP3 889 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 CHCHD4Q8N4Q1 142 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 AADATQ8N5Z0 425 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 LMX1AQ8TE12 382 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 PIH1D2Q8WWB5 315 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 TP53INP1Q96A56 240 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 MVB12BQ9H7P6 319 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 KLHL42Q9P2K6 505 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 B4DGG1 531 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 STX16-NPEPL1H3BU86 382 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 STX16O14662 325 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 MRASO14807 208 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 CD6P30203 668 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 ZNF140P52738 457 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-211ENST00000413186 LRIT3Q3SXY7 679 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 KCTD11Q693B1 232 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 BHLHB9Q6PI77 547 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 TRIM74Q86UV6 250 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 TMEM132CQ8N3T6 1108 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 EFCAB3Q8N7B9 438 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 ZNF555Q8NEP9 628 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 OR9A1PQ8NGU1 263 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 RHEBL1Q8TAI7 183 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 WFDC5Q8TCV5 224 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 WBP2Q969T9 261 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 FAM162AQ96A26 154 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 OTULINQ96BN8 352 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 THAP11Q96EK4 314 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 FAM120BQ96EK7 910 aaKnown RBP8.33□□□□□ -1.08
SYNE1-211ENST00000413186 ZNF778Q96MU6 729 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 BTRCQ9Y297 605 aa8.33□□□□□ -1.08
SYNE1-211ENST00000413186 BTN3A3O00478 584 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 CD72P21854 359 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 ECHS1P30084 290 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 SHMT2P34897 504 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 STXBP1P61764 594 aaKnown RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 LRRC74AQ0VAA2 488 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 PRSS36Q5K4E3 855 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 PRAMEF14Q5SWL7 426 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 PRAMEF13Q5VWM6 474 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 TRIM40Q6P9F5 258 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 OXR1Q8N573 874 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 PIGKQ92643 395 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 CHFRQ96EP1 664 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 LRTM1Q9HBL6 345 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 MRPS30Q9NP92 439 aaKnown RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 STX18Q9P2W9 335 aaKnown RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 FZD4Q9ULV1 537 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 SNX7Q9UNH6 387 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 LRRC37A2A6NM11 1700 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 WASH3PC4AMC7 463 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 HTRA2O43464 458 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 SH3BGRLO75368 114 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 LYPLA1O75608 230 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 PSMG1O95456 288 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 ATXN1LP0C7T5 689 aaKnown RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 CCR8P51685 355 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 ARHGAP8P85298 464 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 SWT1Q5T5J6 900 aaKnown RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 C10orf62Q5T681 223 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 HLA-DQA1Q5Y7H0 255 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 IRGCQ6NXR0 463 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 ERICH5Q6P6B1 374 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 CYP2U1Q7Z449 544 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 PPP1R14AQ96A00 147 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 HHIPQ96QV1 700 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 MKS1Q9NXB0 559 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 CCDC167Q9P0B6 97 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 MARCH4Q9P2E8 410 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 MMP17Q9ULZ9 603 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 COLQQ9Y215 455 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-211ENST00000413186 MTCH2Q9Y6C9 303 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 BBIP1A8MTZ0 92 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 C2CD4DB7Z1M9 353 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 MBTPS2O43462 519 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 ZMPSTE24O75844 475 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 SYPP08247 313 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 THEGLP0DJG4 465 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 MPSTP25325 297 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 KRT20P35900 424 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 TMEM154Q6P9G4 183 aa8.32□□□□□ -1.08
SYNE1-211ENST00000413186 C16orf62Q7Z3J2 963 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms