RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 TMEM139Q8IV31 216 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 TESCQ96BS2 214 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 MEPEQ9NQ76 525 aaPredicted RBP12.66□□□□□ -0.38
COL6A3-206ENST00000409809 AXIN2Q9Y2T1 843 aa12.66□□□□□ -0.38
COL6A3-206ENST00000409809 GXYLT2A0PJZ3 443 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 COQ9O75208 318 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 ETFAP13804 333 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 MPSTP25325 297 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 IGFALSP35858 605 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 POU4F2Q12837 409 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 CEP97Q8IW35 865 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 HHATLQ9HCP6 504 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 FLRT1Q9NZU1 646 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 PPM1HQ9ULR3 514 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 ABHD14A-ACY1A0A1B0GW23 586 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 FAM46CQ5VWP2 391 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 SLC16A9Q7RTY1 509 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 GALNT7Q86SF2 657 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 C11orf16Q9NQ32 467 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 ENAMQ9NRM1 1142 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 PCDHB7Q9Y5E2 793 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 HLA-EP13747 358 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 GJA1P17302 382 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 EPHB3P54753 998 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 HLCSP50747 726 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 TAS2R31P59538 309 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 NOMO3P69849 1222 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 NOMO1Q15155 1222 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 BCL2A1Q16548 175 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 METTL11BQ5VVY1 283 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 ARSKQ6UWY0 536 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 J3QR89 54 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 NCK1P16333 377 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 CD86P42081 329 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 PAPD4Q6PIY7 484 aaKnown RBP12.65□□□□□ -0.38
COL6A3-206ENST00000409809 ZFPM1Q8IX07 1006 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 SCGB1C1Q8TD33 95 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 OR4K3Q96R72 315 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 WACQ9BTA9 647 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 PKLRP30613 574 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 CDH12P55289 794 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 SPOCK1Q08629 439 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 C3orf33Q6P1S2 294 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 COQ10AQ96MF6 247 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 DIP2CQ9Y2E4 1556 aa12.65□□□□□ -0.38
COL6A3-206ENST00000409809 F8VP50 259 aa12.65□□□□□ -0.39
COL6A3-206ENST00000409809 TLX3O43711 291 aaPredicted RBP12.65□□□□□ -0.39
COL6A3-206ENST00000409809 ACVR2AP27037 513 aa12.65□□□□□ -0.39
COL6A3-206ENST00000409809 RELL1Q8IUW5 271 aa12.65□□□□□ -0.39
COL6A3-206ENST00000409809 CARNMT1Q8N4J0 409 aa12.65□□□□□ -0.39
COL6A3-206ENST00000409809 KDM1BQ8NB78 822 aa12.65□□□□□ -0.39
COL6A3-206ENST00000409809 F5H0A9 414 aaPredicted RBP12.64□□□□□ -0.39
COL6A3-206ENST00000409809 B3GAT3O94766 335 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 PLATP00750 562 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 MMP10P09238 476 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 MAP3K8P41279 467 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 PRKXP51817 358 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 SKA3Q8IX90 412 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 OR52B2Q96RD2 323 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 ADAM2Q99965 735 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 KATNBL1Q9H079 304 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 KCTD5Q9NXV2 234 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 SOX9P48436 509 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 TMEM214Q6NUQ4 689 aaKnown RBP12.64□□□□□ -0.39
COL6A3-206ENST00000409809 COPS5Q92905 334 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 CHFRQ96EP1 664 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 GPN2Q9H9Y4 310 aaPredicted RBP12.64□□□□□ -0.39
COL6A3-206ENST00000409809 EVA1BQ9NVM1 165 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 PIK3C2BO00750 1634 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 CYP27B1O15528 508 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 KCNA5P22460 613 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 ARL3P36405 182 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 SMARCB1Q12824 385 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 DGLUCYQ7Z3D6 616 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 OR14A2Q96R54 314 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 GAL3ST1Q99999 423 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 MAF1Q9H063 256 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 ARL6Q9H0F7 186 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 SMURF1Q9HCE7 757 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 RUVBL1Q9Y265 456 aaKnown RBP12.64□□□□□ -0.39
COL6A3-206ENST00000409809 SLC27A6Q9Y2P4 619 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 KIDINS220Q9ULH0 1771 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 CPN2P22792 545 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 VAMP1P23763 118 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 OAZ1P54368 228 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 PTCHD3Q3KNS1 767 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 SPIN4Q56A73 249 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 ALG10BQ5I7T1 473 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF425Q6IV72 752 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 IRF2BP2Q7Z5L9 587 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 TNFRSF25Q93038 417 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 AP1M2Q9Y6Q5 423 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 DUXAA6NLW8 204 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 FFAR3O14843 346 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 GPR42O15529 346 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 ERCC1P07992 297 aaPredicted RBP12.64□□□□□ -0.39
COL6A3-206ENST00000409809 MYF6P23409 242 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 COQ5Q5HYK3 327 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 MAGIXQ9H6Y5 334 aa12.64□□□□□ -0.39
COL6A3-206ENST00000409809 PNO1Q9NRX1 252 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms