RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 CD27P26842 260 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 HMOX2P30519 316 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 HALP42357 657 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CDKL1Q00532 357 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CSTF1Q05048 431 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 ILF3Q12906 894 aaKnown RBP eCLIP3.6□□□□□ -1.83
RTN4-208ENST00000404909 SRSF5Q13243 272 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 UBAP2LQ14157 1087 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 FASTKQ14296 549 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 LSM12Q3MHD2 195 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 SPDYAQ5MJ70 313 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 TMEM198Q66K66 360 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 THOC6Q86W42 341 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 DCUN1D3Q8IWE4 304 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 OR5K2Q8NHB8 316 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 MAGEC3Q8TD91 643 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 ZNF480Q8WV37 535 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 JPH3Q8WXH2 748 aaPredicted RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 RAD51AP1Q96B01 352 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 SH3KBP1Q96B97 665 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 FBXL8Q96CD0 374 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 C19orf60Q96EN9 201 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 FAR2Q96K12 515 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 ZNF382Q96SR6 550 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 TRIT1Q9H3H1 467 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 XKR8Q9H6D3 395 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 DNAJC11Q9NVH1 559 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 SCHIP1Q9P0W5 487 aaPredicted RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 DLGAP2Q9P1A6 1054 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 GIMAP2Q9UG22 337 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 KLF15Q9UIH9 416 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 LNPEPQ9UIQ6 1025 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 HAO1Q9UJM8 370 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 RNF11Q9Y3C5 154 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 SPTY2D1-AS1A0A0U1RR47 76 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 KLHL33A6NCF5 533 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 TNFRSF10CO14798 259 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 EML2O95834 649 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CELA2BP08218 269 aaPredicted RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 ALOX15P16050 662 aaPredicted RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 CD38P28907 300 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CSNK1EP49674 416 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 PKNOX1P55347 436 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 HNRNPH2P55795 449 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 NAA20P61599 178 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 TBPL1P62380 186 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 TRAF3Q13114 568 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 FZD2Q14332 565 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 UAP1L1Q3KQV9 507 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 PRRT3Q5FWE3 981 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 XKR6Q5GH73 641 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 TJAP1Q5JTD0 557 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CDKL4Q5MAI5 379 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CAPN13Q6MZZ7 669 aaPredicted RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 IL27RAQ6UWB1 636 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 C6orf89Q6UWU4 347 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 UNC5DQ6UXZ4 953 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 LRRC70Q7Z2Q7 622 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 TAF8Q7Z7C8 310 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CLNKQ7Z7G1 428 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 SPATS2Q86XZ4 545 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 CADM4Q8NFZ8 388 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 UBTD2Q8WUN7 234 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 TUBGCP3Q96CW5 907 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 SCARF2Q96GP6 870 aaPredicted RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 C3orf30Q96M34 536 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 ORAI3Q9BRQ5 295 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 ATXN2Q99700 1313 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 E7ENX8 843 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 MYO1CO00159 1063 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 SDHDO14521 159 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CCDC22O60826 627 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CLDN9O95484 217 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CBX6O95503 412 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 WNT1P04628 370 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 FGF4P08620 206 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 UROSP10746 265 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 HGFP14210 728 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 JUNDP17535 347 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 GGT5P36269 586 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 NUDT1P36639 197 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 SLC6A12P48065 614 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 DHPSP49366 369 aaPredicted RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 HK2P52789 917 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 PNLIPRP1P54315 467 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 RACK1P63244 317 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 IRF8Q02556 426 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 TAP2Q03519 686 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 DMPKQ09013 629 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CDC16Q13042 620 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 EIF2B5Q13144 721 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 CHIT1Q13231 466 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 LRP8Q14114 963 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 SPRED3Q2MJR0 410 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 UGT3A2Q3SY77 523 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 GALNTL6Q49A17 601 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 KANK2Q63ZY3 851 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 CAPRIN2Q6IMN6 1127 aaKnown RBP3.6□□□□□ -1.83
RTN4-208ENST00000404909 SLC36A4Q6YBV0 504 aa3.6□□□□□ -1.83
RTN4-208ENST00000404909 PARGQ86W56 976 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms