RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 INPPL1O15357 1258 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 NDUFS4O43181 175 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 MPZL2O60487 215 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 GADD45GO95257 159 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 AGR2O95994 175 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 GOT2P00505 430 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 MT-ND5P03915 603 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 RPL6Q02878 288 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 UBAP2LQ14157 1087 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 SLBPQ14493 270 aaKnown RBP eCLIP7.05□□□□□ -1.28
UPF2-203ENST00000397053 TMEM44Q2T9K0 475 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 C1orf189Q5VU69 101 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 ZNF627Q7L945 461 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 HDAC7Q8WUI4 952 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 CYB5D2Q8WUJ1 264 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 RGMAQ96B86 450 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 YIPF4Q9BSR8 244 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 PDZD7Q9H5P4 517 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 LRRC19Q9H756 370 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 CYP3A7-CYP3A51PA0A087WV96 503 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 AGPSO00116 658 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 PPEF2O14830 753 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 PCDH7O60245 1069 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 USP2O75604 605 aaPredicted RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 POP7O75817 140 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 ACTL6BO94805 426 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 HRGP04196 525 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 HMGN1P05114 100 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 SERPINA6P08185 405 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 PVALBP20472 110 aaPredicted RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 MMP8P22894 467 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 CYP3A7P24462 503 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 MPSTP25325 297 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 CHRNB4P30926 498 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 CCR10P46092 362 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 ENTPD1P49961 510 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 RPS14P62263 151 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 SYT16Q17RD7 645 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 TNFAIP8L3Q5GJ75 292 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 TSTD2Q5T7W7 516 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 DUS1LQ6P1R4 473 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 BRAT1Q6PJG6 821 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 NET1Q7Z628 596 aaPredicted RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 ALDH16A1Q8IZ83 802 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 GLIS3Q8NEA6 775 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 GRHL3Q8TE85 626 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 ACOT12Q8WYK0 555 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 TFGQ92734 400 aaPredicted RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 EZH1Q92800 747 aaPredicted RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 B3GALT6Q96L58 329 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 COPS4Q9BT78 406 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 DUSP26Q9BV47 211 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 POLR2J3Q9H1A7 115 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 MARCH7Q9H992 704 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 C12orf4Q9NQ89 552 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 IFT80Q9P2H3 777 aaPredicted RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 EIF2B4Q9UI10 523 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 TMPRSS11EQ9UL52 423 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 TMEM5Q9Y2B1 443 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 PADI2Q9Y2J8 665 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 TCAF1Q9Y4C2 921 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 KIF1BO60333 1816 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 GPR89AB7ZAQ6 455 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 SAP18O00422 153 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 BCKDKO14874 412 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 LYPLA2O95372 231 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 CHRM5P08912 532 aaPredicted RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 GPR89BP0CG08 455 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 SLURP2P0DP57 97 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 RPL10P27635 214 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 GBX2P52951 348 aaPredicted RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 CREB5Q02930 508 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 TARDBPQ13148 414 aaKnown RBP eCLIP7.05□□□□□ -1.286e-7■■□□□ 13.3
UPF2-203ENST00000397053 ELOCQ15369 112 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 ZC3H14Q6PJT7 736 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 B3GNT6Q6ZMB0 384 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 GK5Q6ZS86 529 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 CYP2U1Q7Z449 544 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 CROCCP3Q8IVE0 287 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 JAGN1Q8N5M9 183 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 C1orf127Q8N9H9 656 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 KAZALD1Q96I82 304 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 COL21A1Q96P44 957 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 PCYOX1Q9UHG3 505 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 CFAP20Q9Y6A4 193 aaKnown RBP7.05□□□□□ -1.28
UPF2-203ENST00000397053 ALKQ9UM73 1620 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 NCOA3Q9Y6Q9 1424 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 METTL21EPA6NDL7 271 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 IRAK2O43187 625 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 AP2A1O95782 977 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 CSN2P05814 226 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 HSD3B1P14060 373 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 MAGP20916 626 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 MARCKSL1P49006 195 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 BNIP3Q12983 259 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 DNASE1L3Q13609 305 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 GRM2Q14416 872 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 PAOXQ6QHF9 649 aa7.05□□□□□ -1.28
UPF2-203ENST00000397053 AHSA2Q719I0 299 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms