RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 NFKB2Q00653 900 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 EMX2Q04743 252 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 FADDQ13158 208 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 RCAN2Q14206 197 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 GRB7Q14451 532 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 HECTD3Q5T447 861 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 GRASPQ7Z6J2 395 aaPredicted RBP10.9□□□□□ -0.67
CUX1-204ENST00000393824 GIMAP1Q8WWP7 306 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 PROX1Q92786 737 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 REXO5Q96IC2 774 aaKnown RBP10.9□□□□□ -0.67
CUX1-204ENST00000393824 ZSWIM3Q96MP5 696 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 DUSP21Q9H596 190 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 ZNF576Q9H609 170 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 LTB4R2Q9NPC1 389 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 TRPM5Q9NZQ8 1165 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 MPP6Q9NZW5 540 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 CCL26Q9Y258 94 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 TLR6Q9Y2C9 796 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 GPR45Q9Y5Y3 372 aa10.9□□□□□ -0.67
CUX1-204ENST00000393824 ASPDHA6ND91 283 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 H0Y626 953 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 TRIM16O95361 564 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 S100A5P33763 92 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 MTHFRP42898 656 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 SLC1A2P43004 574 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 SEPHS1P49903 392 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 ST13P50502 369 aaKnown RBP10.89□□□□□ -0.67
CUX1-204ENST00000393824 SH3BP2P78314 561 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 ZNF45Q02386 682 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 DLX2Q07687 328 aaPredicted RBP10.89□□□□□ -0.67
CUX1-204ENST00000393824 CDK5R2Q13319 367 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 RPS6KA2Q15349 733 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 DUSP6Q16828 381 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 FAM98BQ52LJ0 330 aaKnown RBP10.89□□□□□ -0.67
CUX1-204ENST00000393824 UNC50Q53HI1 259 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 DENND5AQ6IQ26 1287 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 ZNF544Q6NX49 715 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 PNCKQ6P2M8 343 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 CCDC149Q6ZUS6 474 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 CIR1Q86X95 450 aaPredicted RBP10.89□□□□□ -0.67
CUX1-204ENST00000393824 CCDC103Q8IW40 242 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 SVOPLQ8N434 492 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 SAMD11Q96NU1 681 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 SERPINB11Q96P15 392 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 RBM4BQ9BQ04 359 aaKnown RBP10.89□□□□□ -0.67
CUX1-204ENST00000393824 RBM4Q9BWF3 364 aaKnown RBP10.89□□□□□ -0.67
CUX1-204ENST00000393824 SLC46A2Q9BY10 475 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 CLPBQ9H078 707 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 ATXN3LQ9H3M9 355 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 SMURF2Q9HAU4 748 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 TM9SF3Q9HD45 589 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 C3orf18Q9UK00 162 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 PCDHGA10Q9Y5H3 936 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 OBSL1O75147 1896 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 CCDC154A6NI56 674 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 CLDN24A6NM45 220 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 SYCE1LA8MT33 242 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 C9JVG2 144 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 GREM1O60565 184 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 VPS4BO75351 444 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 PRKD3O94806 890 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 RHOP08100 348 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 JUNDP17535 347 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 SLC6A4P31645 630 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 IFNA8P32881 189 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 UGT2B10P36537 528 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 ATP5C1P36542 298 aaKnown RBP10.89□□□□□ -0.67
CUX1-204ENST00000393824 ETV3P41162 512 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 HTR3AP46098 478 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 CLK3P49761 638 aaKnown RBP10.89□□□□□ -0.67
CUX1-204ENST00000393824 SGSHP51688 502 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 CHRNB3Q05901 458 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 CLCA4Q14CN2 919 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 PLEKHG6Q3KR16 790 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 ZNF404Q494X3 552 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 MS4A13Q5J8X5 152 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 PAGE3Q5JUK9 113 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 ESRP1Q6NXG1 681 aaKnown RBP10.89□□□□□ -0.67
CUX1-204ENST00000393824 GDPD3Q7L5L3 318 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 ZNF683Q8IZ20 524 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 SLC38A6Q8IZM9 456 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 METTL4Q8N3J2 472 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 MCOLN3Q8TDD5 553 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 ING5Q8WYH8 240 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 IGSF8Q969P0 613 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 TRIM63Q969Q1 353 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 ISG20Q96AZ6 181 aaKnown RBP10.89□□□□□ -0.67
CUX1-204ENST00000393824 TMEM74Q96NL1 305 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 B3GNT4Q9C0J1 378 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 EPS8L2Q9H6S3 715 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 COMMD8Q9NX08 183 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 OPTCQ9UBM4 332 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 DNAJB9Q9UBS3 223 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 V9GYQ6 96 aa10.89□□□□□ -0.67
CUX1-204ENST00000393824 MTCL1Q9Y4B5 1905 aaKnown RBP10.88□□□□□ -0.67
CUX1-204ENST00000393824 USP34Q70CQ2 3546 aa10.88□□□□□ -0.67
CUX1-204ENST00000393824 METTL15A6NJ78 407 aa10.88□□□□□ -0.67
CUX1-204ENST00000393824 HAT1O14929 419 aa10.88□□□□□ -0.67
CUX1-204ENST00000393824 PIP5K1BO14986 540 aa10.88□□□□□ -0.67
CUX1-204ENST00000393824 ICMTO60725 284 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms