RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 MIER2Q8N344 545 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 DACT3Q96B18 629 aaPredicted RBP10.56□□□□□ -0.72
NEDD9-201ENST00000379433 INTS12Q96CB8 462 aaKnown RBP10.56□□□□□ -0.72
NEDD9-201ENST00000379433 PPM1MQ96MI6 270 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 OPTCQ9UBM4 332 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 SLC8A2Q9UPR5 921 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 CFAP20Q9Y6A4 193 aaKnown RBP10.56□□□□□ -0.72
NEDD9-201ENST00000379433 DOCK9Q9BZ29 2069 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 PRORSD1PA6NEY8 169 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 ARHGAP33O14559 1287 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 OXSR1O95747 527 aaPredicted RBP10.56□□□□□ -0.72
NEDD9-201ENST00000379433 C1SP09871 688 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 ADH5P11766 374 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 CAPN3P20807 821 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 CTHP32929 405 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 GRIA3P42263 894 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 MLLT3P42568 568 aaPredicted RBP10.56□□□□□ -0.72
NEDD9-201ENST00000379433 SOX9P48436 509 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 STX5Q13190 355 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 UGT3A2Q3SY77 523 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 ATP6AP1LQ52LC2 224 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 FBXL19Q6PCT2 694 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 SBSNQ6UWP8 590 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 UBE2R2Q712K3 238 aaPredicted RBP10.56□□□□□ -0.72
NEDD9-201ENST00000379433 CLVS1Q8IUQ0 354 aaPredicted RBP10.56□□□□□ -0.72
NEDD9-201ENST00000379433 FUNDC1Q8IVP5 155 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 SGK3Q96BR1 496 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 L3HYPDHQ96EM0 354 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 CIB1Q99828 191 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 HEPHQ9BQS7 1158 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 BRINP2Q9C0B6 783 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 FAM83DQ9H4H8 585 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 ZIM2Q9NZV7 527 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 SH3BGRL2Q9UJC5 107 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 SNX13Q9Y5W8 968 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 SNTNA6NMZ2 147 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 ZNF839A8K0R7 811 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 HTRA2O43464 458 aaPredicted RBP10.56□□□□□ -0.72
NEDD9-201ENST00000379433 DGKAP23743 735 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 B4GALNT1Q00973 533 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 NFYCQ13952 458 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 SQLEQ14534 574 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 NR1D2Q14995 579 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 SHHQ15465 462 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 ZNF783Q6ZMS7 281 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 GALNT13Q8IUC8 556 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 TRAPPC5Q8IUR0 188 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 OR6C4Q8NGE1 309 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 RHEBL1Q8TAI7 183 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 GANCQ8TET4 914 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 NRTNQ99748 197 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 ACAT2Q9BWD1 397 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 C1orf21Q9H246 121 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 CD93Q9NPY3 652 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 SLC22A14Q9Y267 594 aa10.56□□□□□ -0.72
NEDD9-201ENST00000379433 LOC730098B7Z3J9 87 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 K7ESM1 405 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 HNRNPRO43390 633 aaKnown RBP10.55□□□□□ -0.72
NEDD9-201ENST00000379433 PEX1O43933 1283 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 MMP20O60882 483 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 SEC22BO75396 215 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 VCLP18206 1134 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 MSH3P20585 1137 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 CBX5P45973 191 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 TMED10P49755 219 aaKnown RBP10.55□□□□□ -0.72
NEDD9-201ENST00000379433 AQP4P55087 323 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 AP5B1Q2VPB7 878 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 SYTL3Q4VX76 610 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 RFTN2Q52LD8 501 aaPredicted RBP10.55□□□□□ -0.72
NEDD9-201ENST00000379433 FAM78AQ5JUQ0 283 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 PSRC1Q6PGN9 363 aaPredicted RBP10.55□□□□□ -0.72
NEDD9-201ENST00000379433 ANKRD46Q86W74 232 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 FGF13Q92913 245 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 FAR2Q96K12 515 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 LRGUKQ96M69 825 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 CCDC28BQ9BUN5 200 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 NDUFAF1Q9Y375 327 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 TANC1Q9C0D5 1861 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 C16orf96A6NNT2 1141 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 LZTS3O60299 673 aaPredicted RBP10.55□□□□□ -0.72
NEDD9-201ENST00000379433 CBFA2T3O75081 653 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 WFS1O76024 890 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 WDR47O94967 919 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 WISP3O95389 354 aaPredicted RBP10.55□□□□□ -0.72
NEDD9-201ENST00000379433 ESRRBO95718 433 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 EPHX1P07099 455 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 HIST1H2AGP0C0S8 130 aaPredicted RBP10.55□□□□□ -0.72
NEDD9-201ENST00000379433 G6PDP11413 515 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 APEHP13798 732 aaKnown RBP10.55□□□□□ -0.72
NEDD9-201ENST00000379433 HIST1H2ADP20671 130 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 GALNSP34059 522 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 SPINT3P49223 89 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 CTSCP53634 463 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 SGCGQ13326 291 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 IL23RQ5VWK5 629 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 CERS6Q6ZMG9 384 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 MAMDC2Q7Z304 686 aaPredicted RBP10.55□□□□□ -0.72
NEDD9-201ENST00000379433 DHDDSQ86SQ9 333 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 ADAMTSL2Q86TH1 951 aa10.55□□□□□ -0.72
NEDD9-201ENST00000379433 CPXM2Q8N436 756 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms