RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 PWWP2BQ6NUJ5 590 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 SHQ1Q6PI26 577 aaKnown RBP1.96□□□□□ -2.1
VPS13A-206ENST00000376646 RBPMS2Q6ZRY4 209 aaKnown RBP1.96□□□□□ -2.1
VPS13A-206ENST00000376646 DNAJB7Q7Z6W7 309 aaPredicted RBP1.96□□□□□ -2.1
VPS13A-206ENST00000376646 ANKRD23Q86SG2 305 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 PI4KAP1Q8N8J0 262 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 ZNF383Q8NA42 475 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 KBTBD8Q8NFY9 601 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 OR2T12Q8NG77 320 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 OR2AJ1Q8NGZ0 328 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 TMEM143Q96AN5 459 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 LINC00479Q96M42 142 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 FER1L6-AS2Q96M78 137 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 MS4A10Q96PG2 267 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 NAA11Q9BSU3 229 aaPredicted RBP1.96□□□□□ -2.1
VPS13A-206ENST00000376646 CABLES2Q9BTV7 478 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 FNDC11Q9BVV2 318 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 SLA2Q9H6Q3 261 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 NOL11Q9H8H0 719 aaKnown RBP1.96□□□□□ -2.1
VPS13A-206ENST00000376646 EQTNQ9NQ60 294 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 OSER1Q9NX31 292 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 A0A0J9YWU9 116 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 PRSS51A0A1B0GVH4 220 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 A0A1W2PPM1 405 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 MEIOCA2RUB1 952 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 ANKUB1A6NFN9 424 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 OR6C76A6NM76 312 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 TBCAO75347 108 aaKnown RBP1.96□□□□□ -2.1
VPS13A-206ENST00000376646 CLPTM1O96005 669 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 HMBSP08397 361 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 QDPRP09417 244 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 LIFP15018 202 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 ERCC2P18074 760 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 CDK3Q00526 305 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 ARMC4Q5T2S8 1044 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 GCNT6Q5T4J0 391 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 RNASEH2BQ5TBB1 312 aaKnown RBP1.96□□□□□ -2.1
VPS13A-206ENST00000376646 CCDC186Q7Z3E2 898 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 GALNTL5Q7Z4T8 443 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 CENPVQ7Z7K6 275 aaPredicted RBP1.96□□□□□ -2.1
VPS13A-206ENST00000376646 ISCA2Q86U28 154 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 DNAJC22Q8N4W6 341 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 XXYLT1Q8NBI6 393 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 KIF18AQ8NI77 898 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 HDAC11Q96DB2 347 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 SLC47A1Q96FL8 570 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 CFAP57Q96MR6 1250 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 ABHD6Q9BV23 337 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 TRIM15Q9C019 465 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 ANKZF1Q9H8Y5 726 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 HHATLQ9HCP6 504 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 PLCXD1Q9NUJ7 323 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 PRMT7Q9NVM4 692 aaPredicted RBP1.96□□□□□ -2.1
VPS13A-206ENST00000376646 NPAP1Q9NZP6 1156 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 KLHL8Q9P2G9 620 aaPredicted RBP1.96□□□□□ -2.1
VPS13A-206ENST00000376646 SLC24A2Q9UI40 661 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 TUBE1Q9UJT0 475 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 ANAPC5Q9UJX4 755 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 PRSS21Q9Y6M0 314 aa1.96□□□□□ -2.1
VPS13A-206ENST00000376646 H7C423 109 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 MEIS2O14770 477 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 ARHGEF9O43307 516 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 MOCS3O95396 460 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 PENKP01210 267 aaPredicted RBP1.95□□□□□ -2.1
VPS13A-206ENST00000376646 FYNP06241 537 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 OR52Z1P0C646 297 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 LINGO3P0C6S8 592 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 FRMD6-AS1P0C7T7 363 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 FDPSP14324 419 aaKnown RBP1.95□□□□□ -2.1
VPS13A-206ENST00000376646 ACHEP22303 614 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 CEACAM8P31997 349 aaPredicted RBP1.95□□□□□ -2.1
VPS13A-206ENST00000376646 WNT5AP41221 380 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 PSMC4P43686 418 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 CCR10P46092 362 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 RAB28P51157 221 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 HNRNPKP61978 463 aaKnown RBP eCLIP1.95□□□□□ -2.1
VPS13A-206ENST00000376646 TFCP2Q12800 502 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 GAGE2BQ13066 116 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 TUBB2AQ13885 445 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 GAGE2EQ4V326 116 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 KLHL26Q53HC5 615 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 KRT39Q6A163 491 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 GAGE2AQ6NT46 116 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 ZBTB49Q6ZSB9 765 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 Q6ZSR9 355 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 ZNF440Q8IYI8 595 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 NKAIN3Q8N8D7 197 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 CAMKVQ8NCB2 501 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 EXD1Q8NHP7 514 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 GRHL3Q8TE85 626 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 SMPDL3BQ92485 455 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 DAZLQ92904 295 aaKnown RBP1.95□□□□□ -2.1
VPS13A-206ENST00000376646 SPATA17Q96L03 361 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 ZNF558Q96NG5 402 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 TUBB2BQ9BVA1 445 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 NUP85Q9BW27 656 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 EDEM3Q9BZQ6 932 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 UBXN6Q9BZV1 441 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 DPAGT1Q9H3H5 408 aa1.95□□□□□ -2.1
VPS13A-206ENST00000376646 PIH1D3Q9NQM4 214 aaKnown RBP1.95□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms