RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 PYCR2Q96C36 320 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 EXOC2Q96KP1 924 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 MMP27Q9H306 513 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 BPIFA1Q9NP55 256 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 FARSBQ9NSD9 589 aaKnown RBP20.66■□□□□ 0.9
UPF3A-202ENST00000375299 NDRG4Q9ULP0 352 aaKnown RBP20.66■□□□□ 0.9
UPF3A-202ENST00000375299 ABCG2Q9UNQ0 655 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 IFT52Q9Y366 437 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 DHRS7Q9Y394 339 aa20.66■□□□□ 0.9
UPF3A-202ENST00000375299 ARIH1Q9Y4X5 557 aaPredicted RBP20.66■□□□□ 0.9
UPF3A-202ENST00000375299 SAGE2PA6NJ88 616 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 TAF4O00268 1085 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 AREL1O15033 823 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 PER2O15055 1255 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 LCKP06239 509 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 PTPN2P17706 415 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 PTGER3P43115 390 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 ZNF404Q494X3 552 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 RNF165Q6ZSG1 346 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 CLHC1Q8NHS4 586 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 IPCEF1Q8WWN9 437 aaPredicted RBP20.65■□□□□ 0.9
UPF3A-202ENST00000375299 PSKH2Q96QS6 385 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 HOXD1Q9GZZ0 328 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 KCNH6Q9H252 994 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 NSUN3Q9H649 340 aaKnown RBP20.65■□□□□ 0.9
UPF3A-202ENST00000375299 RMI1Q9H9A7 625 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 LRTM1Q9HBL6 345 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 TM9SF3Q9HD45 589 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 MARCH2Q9P0N8 246 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 OPTCQ9UBM4 332 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 SAMD4AQ9UPU9 718 aaKnown RBP20.65■□□□□ 0.9
UPF3A-202ENST00000375299 UGT2A1Q9Y4X1 527 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 A0A096LPI6 279 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 SLC12A8A0AV02 714 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 MYADML2A6NDP7 307 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 METTL15A6NJ78 407 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 SNPHO15079 494 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 SEC22BO75396 215 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 MYCLP1P12525 358 aaPredicted RBP20.65■□□□□ 0.9
UPF3A-202ENST00000375299 KRT20P35900 424 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 NDUFA5Q16718 116 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 COLEC12Q5KU26 742 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 NADSYN1Q6IA69 706 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 TMEM132CQ8N3T6 1108 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 POC5Q8NA72 575 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 KLHDC9Q8NEP7 349 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 CEP295NLQ96MC4 621 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 P2RY12Q9H244 342 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 ELOVL2Q9NXB9 296 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 TESMINQ9Y4I5 508 aa20.65■□□□□ 0.9
UPF3A-202ENST00000375299 MYO1GB0I1T2 1018 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 WNT9AO14904 365 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 TAPBPO15533 448 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 TBX1O43435 398 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 RFPL2O75678 378 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 BMP1P13497 986 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 EFNA1P20827 205 aaPredicted RBP20.64■□□□□ 0.89
UPF3A-202ENST00000375299 UGT2B10P36537 528 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 TUBA1BP68363 451 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 ABHD18Q0P651 414 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 USP39Q53GS9 565 aaKnown RBP20.64■□□□□ 0.89
UPF3A-202ENST00000375299 UBE2UQ5VVX9 321 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 TUBA1AQ71U36 451 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 TAS2R42Q7RTR8 314 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 OR7D4Q8NG98 312 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 SLC38A4Q969I6 547 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 SIGLEC11Q96RL6 698 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 ITPAQ9BY32 194 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 PCDHB8Q9UN66 801 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 MAN2B2Q9Y2E5 1009 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 ANGPTL3Q9Y5C1 460 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 AGAP5A6NIR3 686 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 FAM47E-STBD1D6RA91 191 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 STX7O15400 261 aaKnown RBP20.64■□□□□ 0.89
UPF3A-202ENST00000375299 WDR47O94967 919 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 KCNK2O95069 426 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 ZNF682O95780 498 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 GUCA1CO95843 209 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 GLUD1P00367 558 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 IGLV3-27P01718 113 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 TACR2P21452 398 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 HOXA9P31269 272 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 CLK1P49759 484 aaKnown RBP20.64■□□□□ 0.89
UPF3A-202ENST00000375299 CARTPTQ16568 116 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 LRIT3Q3SXY7 679 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 STEAP3Q658P3 488 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 TRIM46Q7Z4K8 759 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 TSPYL5Q86VY4 417 aaPredicted RBP20.64■□□□□ 0.89
UPF3A-202ENST00000375299 EFHBQ8N7U6 833 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 C8orf48Q96LL4 319 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 UROC1Q96N76 676 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 TNKS2Q9H2K2 1166 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 ZBTB20Q9HC78 741 aaPredicted RBP20.64■□□□□ 0.89
UPF3A-202ENST00000375299 SERHLQ9NQF3 203 aa20.64■□□□□ 0.89
UPF3A-202ENST00000375299 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.64■□□□□ 0.89
UPF3A-202ENST00000375299 UBA2Q9UBT2 640 aaPredicted RBP20.64■□□□□ 0.89
UPF3A-202ENST00000375299 ZNF490Q9ULM2 529 aaPredicted RBP20.64■□□□□ 0.89
UPF3A-202ENST00000375299 TRPM7Q96QT4 1865 aa20.63■□□□□ 0.89
UPF3A-202ENST00000375299 PABPN1LA6NDY0 278 aaKnown RBP20.63■□□□□ 0.89
UPF3A-202ENST00000375299 ULK1O75385 1050 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms