RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 S100GP29377 79 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 WASP42768 502 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PSMD8P48556 350 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 TPTEP56180 551 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 RPL26P61254 145 aaKnown RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 STXBP1P61764 594 aaKnown RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PUDPQ08623 228 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 MADCAM1Q13477 382 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PLEKHG6Q3KR16 790 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 FAAH2Q6GMR7 532 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 ANO7Q6IWH7 933 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PHTF2Q8N3S3 785 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 OR14C36Q8NHC7 312 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PLEKHO2Q8TD55 490 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 TBC1D17Q9HA65 648 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 C11orf16Q9NQ32 467 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 ITM2CQ9NQX7 267 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 DKK3Q9UBP4 350 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 ITGB4P16144 1822 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 LAMB4A4D0S4 1761 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 ILVBLA1L0T0 632 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PCDH7O60245 1069 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 CYP11A1P05108 521 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 CHRM5P08912 532 aaPredicted RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 UGT1A6P19224 532 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 UGT1A1P22309 533 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 UGT1A4P22310 534 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 UGT1A3P35503 534 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 HTRA3P83110 453 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 CAP1Q01518 475 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 HSF2Q03933 536 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 FOXM1Q08050 763 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 ZNF155Q12901 538 aaPredicted RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 GRB14Q14449 540 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 FBXO42Q6P3S6 717 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 TNFAIP8L2Q6P589 184 aaPredicted RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 RELL1Q8IUW5 271 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 CPA6Q8N4T0 437 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 OR10G2Q8NGC3 310 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 TAMM41Q96BW9 452 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PYCR2Q96C36 320 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PRICKLE1Q96MT3 831 aaPredicted RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 CAMK1GQ96NX5 476 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PTPN18Q99952 460 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 SLC39A3Q9BRY0 314 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 USP29Q9HBJ7 922 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 RNF186Q9NXI6 227 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 ZNF879B4DU55 563 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PITPNM1O00562 1244 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PDPK1O15530 556 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 NOS1APO75052 506 aaPredicted RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 TBX18O95935 607 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 GIMD1P0DJR0 217 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 RPL17P18621 184 aaKnown RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 NFKB2Q00653 900 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 MVKQ03426 396 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 TARDBPQ13148 414 aaKnown RBP eCLIP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 PAFAH1B3Q15102 231 aaKnown RBP11.2□□□□□ -0.62
PTPRF-203ENST00000372407 SYT16Q17RD7 645 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 USP43Q70EL4 1123 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 B3GALT6Q96L58 329 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 MINDY3Q9H8M7 445 aa11.2□□□□□ -0.62
PTPRF-203ENST00000372407 HAS3O00219 553 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 CCL16O15467 120 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 RSL1D1O76021 490 aaKnown RBP11.19□□□□□ -0.62
PTPRF-203ENST00000372407 DNAJA1P31689 397 aaKnown RBP11.19□□□□□ -0.62
PTPRF-203ENST00000372407 CLCN4P51793 760 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 AKR1D1P51857 326 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 CRISP3P54108 245 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 ARF5P84085 180 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 GAD2Q05329 585 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 ZNF33AQ06730 810 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 NPTX1Q15818 432 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 TIGD6Q17RP2 521 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 LDLRAD1Q5T700 205 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 SLC39A4Q6P5W5 647 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 EPGNQ6UW88 154 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 PPP1R14BQ96C90 147 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 GPER1Q99527 375 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 OR51V1Q9H2C8 321 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 SNTG1Q9NSN8 517 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 FLRT1Q9NZU1 646 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 CACNG4Q9UBN1 327 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 PMF1-BGLAPU3KQ54 211 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 C4AP0C0L4 1744 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 COL1A1P02452 1464 aaPredicted RBP11.19□□□□□ -0.62
PTPRF-203ENST00000372407 A0A1W2PP18 115 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 TMEM233B4DJY2 109 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 HOXD13P35453 343 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 SLC30A8Q8IWU4 369 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 OR8H1Q8NGG4 311 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 UFD1Q92890 307 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 RNF31Q96EP0 1072 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 CDK15Q96Q40 435 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 SLC32A1Q9H598 525 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 ZBTB26Q9HCK0 441 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 PFDN2Q9UHV9 154 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 STOML2Q9UJZ1 356 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 LRRC42Q9Y546 428 aa11.19□□□□□ -0.62
PTPRF-203ENST00000372407 C9IYK1 514 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms