RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 SRSF11Q05519 484 aaKnown RBP8.94□□□□□ -0.98
UPF2-202ENST00000357604 CHI3L2Q15782 390 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 UNC5BQ8IZJ1 945 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 ZBTB44Q8NCP5 570 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 OR5K2Q8NHB8 316 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 MANSC1Q9H8J5 431 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 NEU3Q9UQ49 428 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 CAPN14A8MX76 684 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 E7ESA3 106 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 ID4P47928 161 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 LCTLQ6UWM7 567 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 TMEM26Q6ZUK4 368 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 SPATS2Q86XZ4 545 aaKnown RBP8.94□□□□□ -0.98
UPF2-202ENST00000357604 METTL6Q8TCB7 284 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 SELENOMQ8WWX9 145 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 CMTM7Q96FZ5 175 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 GPR22Q99680 433 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 ADAM33Q9BZ11 813 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 UCK1Q9HA47 277 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 NDE1Q9NXR1 346 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 TAC3Q9UHF0 121 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 PCDHGA11Q9Y5H2 935 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 POLR1CO15160 346 aaPredicted RBP8.94□□□□□ -0.98
UPF2-202ENST00000357604 CRHR1P34998 444 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 NBL1P41271 181 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 METTL2BQ6P1Q9 378 aaKnown RBP8.94□□□□□ -0.98
UPF2-202ENST00000357604 C10orf67Q8IYJ2 551 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 ARHGAP24Q8N264 748 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 PPP3R2Q96LZ3 170 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 TMEM237Q96Q45 408 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 FAM107BQ9H098 131 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 SSU72Q9NP77 194 aaKnown RBP8.94□□□□□ -0.98
UPF2-202ENST00000357604 ZNF780BQ9Y6R6 833 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 TLCD2A6NGC4 264 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 GJB3O75712 270 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 CIB2O75838 187 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 MRPS22P82650 360 aaKnown RBP8.94□□□□□ -0.98
UPF2-202ENST00000357604 BIKQ13323 160 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 LIPMQ5VYY2 423 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 ZYG11AQ6WRX3 759 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 FAM92BQ6ZTR7 304 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 ZC3HC1Q86WB0 502 aaKnown RBP8.94□□□□□ -0.98
UPF2-202ENST00000357604 SFTPA1Q8IWL2 248 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 EFCAB3Q8N7B9 438 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 PDXPQ96GD0 296 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 AGAP2Q99490 1192 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 SLC29A3Q9BZD2 475 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 VWA8A3KMH1 1905 aa8.94□□□□□ -0.98
UPF2-202ENST00000357604 K7EPI3 171 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 CFLARO15519 480 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 NUDT21O43809 227 aaKnown RBP8.93□□□□□ -0.98
UPF2-202ENST00000357604 OR10H2O60403 315 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 MT-CO3P00414 261 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 HEXBP07686 556 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 FOLR3P41439 243 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 MNAT1P51948 309 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 ACSM2AQ08AH3 577 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 SF3A2Q15428 464 aaKnown RBP8.93□□□□□ -0.98
UPF2-202ENST00000357604 ACSM2BQ68CK6 577 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 KCTD16Q68DU8 428 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 ASPGQ86U10 573 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 PPP1R3BQ86XI6 285 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 DSELQ8IZU8 1212 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 TRIML2Q8N7C3 387 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 GPBAR1Q8TDU6 330 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 LPGAT1Q92604 370 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 PHF21BQ96EK2 531 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 APOLD1Q96LR9 279 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 FAM111AQ96PZ2 611 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 BBS4Q96RK4 519 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 MRPL40Q9NQ50 206 aaKnown RBP8.93□□□□□ -0.98
UPF2-202ENST00000357604 COPS7AQ9UBW8 275 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 PHF11Q9UIL8 331 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 GSTA4O15217 222 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 LATO43561 262 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 OR1I1O60431 355 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 OR2B3O76000 313 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 PEX11BO96011 259 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 IGHV4-34P06331 123 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 GSTM5P46439 218 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 TUBB3Q13509 450 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 CNTN4Q8IWV2 1026 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 ZUFSPQ96AP4 578 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 ANKZF1Q9H8Y5 726 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 CFAP20Q9Y6A4 193 aaKnown RBP8.93□□□□□ -0.98
UPF2-202ENST00000357604 FADS2P1A8MWK0 482 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 PIWIL4Q7Z3Z4 852 aaKnown RBP8.93□□□□□ -0.98
UPF2-202ENST00000357604 NATD1Q8N6N6 113 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 TAAR9Q96RI9 348 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 PELOQ9BRX2 385 aaKnown RBP8.93□□□□□ -0.98
UPF2-202ENST00000357604 SEMA4BQ9NPR2 832 aaPredicted RBP8.93□□□□□ -0.98
UPF2-202ENST00000357604 SERGEFQ9UGK8 458 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 DMGDHQ9UI17 866 aaKnown RBP8.93□□□□□ -0.98
UPF2-202ENST00000357604 K7ESM1 405 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 TOX3O15405 576 aaPredicted RBP8.93□□□□□ -0.98
UPF2-202ENST00000357604 WFS1O76024 890 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 AK4P27144 223 aaPredicted RBP8.93□□□□□ -0.98
UPF2-202ENST00000357604 SSR2P43308 183 aa8.93□□□□□ -0.98
UPF2-202ENST00000357604 MAZP56270 477 aaKnown RBP8.93□□□□□ -0.98
UPF2-202ENST00000357604 PTPRCAPQ14761 206 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms