RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ALG9Q9H6U8 611 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 PCMTD2Q9NV79 361 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 SPATA7Q9P0W8 599 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 LNPEPQ9UIQ6 1025 aa21.45■■□□□ 1.02
SHMT1-203ENST00000354098 NOVA2Q9UNW9 492 aaKnown RBP21.45■■□□□ 1.02
SHMT1-203ENST00000354098 IGHV5-10-1A0A0J9YXX1 117 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 FAM149AA5PLN7 773 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 KIF1CO43896 1103 aaKnown RBP21.44■■□□□ 1.02
SHMT1-203ENST00000354098 MT-ND3P03897 115 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 HIST1H2AGP0C0S8 130 aaPredicted RBP21.44■■□□□ 1.02
SHMT1-203ENST00000354098 PYGBP11216 843 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 ERGP11308 486 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 HIST1H2ADP20671 130 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 CYP2A13Q16696 494 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 FAM83EQ2M2I3 478 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 ANKS6Q68DC2 871 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 ARMC6Q6NXE6 501 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 FBXO38Q6PIJ6 1188 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 FAM92BQ6ZTR7 304 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 CLEC14AQ86T13 490 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 ADAMTSL2Q86TH1 951 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 OR4D9Q8NGE8 314 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 HIST1H2AHQ96KK5 128 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 CCDC138Q96M89 665 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 HIST1H2AJQ99878 128 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 H2AFJQ9BTM1 129 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 TWSG1Q9GZX9 223 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 RAB33BQ9H082 229 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 ARL15Q9NXU5 204 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 EPHA6Q9UF33 1036 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 CLCA2Q9UQC9 943 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 PIPSLA2A3N6 862 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 AGRPO00253 132 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 C9P02748 559 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 ENO2P09104 434 aaPredicted RBP21.44■■□□□ 1.02
SHMT1-203ENST00000354098 IMPA1P29218 277 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 KPNA2P52292 529 aaKnown RBP21.44■■□□□ 1.02
SHMT1-203ENST00000354098 PNLIPRP1P54315 467 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 ZFP36L1Q07352 338 aaKnown RBP21.44■■□□□ 1.02
SHMT1-203ENST00000354098 PRKAA1Q13131 559 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 CLPPQ16740 277 aaPredicted RBP21.44■■□□□ 1.02
SHMT1-203ENST00000354098 ZXDCQ2QGD7 858 aaPredicted RBP21.44■■□□□ 1.02
SHMT1-203ENST00000354098 RIBC1Q8N443 379 aaPredicted RBP21.44■■□□□ 1.02
SHMT1-203ENST00000354098 RCBTB1Q8NDN9 531 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 RAB11FIP5Q9BXF6 653 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 TRIM54Q9BYV2 358 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 ACTR10Q9NZ32 417 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 STOX2Q9P2F5 926 aaPredicted RBP21.44■■□□□ 1.02
SHMT1-203ENST00000354098 LGALS13Q9UHV8 139 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 OARD1Q9Y530 152 aa21.44■■□□□ 1.02
SHMT1-203ENST00000354098 MN1Q10571 1320 aaPredicted RBP21.43■■□□□ 1.02
SHMT1-203ENST00000354098 A8MU76 341 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 CSO75390 466 aaKnown RBP21.43■■□□□ 1.02
SHMT1-203ENST00000354098 PRDX3P30048 256 aaKnown RBP21.43■■□□□ 1.02
SHMT1-203ENST00000354098 CASP8Q14790 479 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 ISXQ2M1V0 245 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 KRT71Q3SY84 523 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 SUSD1Q6UWL2 747 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 SH2D5Q6ZV89 423 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 FRA10AC1Q70Z53 315 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 RAB42Q8N4Z0 105 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 DCBLD1Q8N8Z6 715 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 FLVCR1-AS1Q8TAF5 88 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 HMGCLL1Q8TB92 370 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 ZDHHC12Q96GR4 267 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 CCDC74BQ96LY2 380 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 OR2A14Q96R47 310 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 PDP2Q9P2J9 529 aa21.43■■□□□ 1.02
SHMT1-203ENST00000354098 A0A1W2PPV9 198 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 NCF1BA6NI72 391 aaPredicted RBP21.42■■□□□ 1.02
SHMT1-203ENST00000354098 NCF1CA8MVU1 366 aaPredicted RBP21.42■■□□□ 1.02
SHMT1-203ENST00000354098 C2orf74A8MZ97 194 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 ISM1B1AKI9 464 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 E7ENX8 843 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 HYAL3O43820 417 aaPredicted RBP21.42■■□□□ 1.02
SHMT1-203ENST00000354098 THRAP10827 490 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 NCF1P14598 390 aaPredicted RBP21.42■■□□□ 1.02
SHMT1-203ENST00000354098 JUPP14923 745 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 AP1S2P56377 157 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 TAP2Q03519 686 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 FOXC1Q12948 553 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 TARDBPQ13148 414 aaKnown RBP eCLIP21.42■■□□□ 1.02
SHMT1-203ENST00000354098 ARHGAP19Q14CB8 494 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 ACAP2Q15057 778 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 TGFBIQ15582 683 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 CEP85LQ5SZL2 805 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 PHF19Q5T6S3 580 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 TMPRSS12Q86WS5 348 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 GPSM1Q86YR5 675 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 FAM20CQ8IXL6 584 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 LRRC56Q8IYG6 542 aaPredicted RBP21.42■■□□□ 1.02
SHMT1-203ENST00000354098 SYTL1Q8IYJ3 562 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 STAG3L4Q8TBR4 150 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 CABS1Q96KC9 395 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 MAP3K3Q99759 626 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 DPYSL5Q9BPU6 564 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 ATG10Q9H0Y0 220 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 ARGLU1Q9NWB6 273 aaPredicted RBP21.42■■□□□ 1.02
SHMT1-203ENST00000354098 POMT2Q9UKY4 750 aa21.42■■□□□ 1.02
SHMT1-203ENST00000354098 RNF112Q9ULX5 631 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms