RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 FAM92BQ6ZTR7 304 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 FAM129CQ86XR2 697 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 ARFGAP2Q8N6H7 521 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 KYQ8NBH2 561 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 OR52E1Q8NGJ3 308 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 BCAS4Q8TDM0 211 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 ASB11Q8WXH4 323 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 RSC1A1Q92681 617 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 KIAA1191Q96A73 305 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 AHCYL2Q96HN2 611 aaKnown RBP8.95□□□□□ -0.98
USP4-202ENST00000351842 CABS1Q96KC9 395 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 C20orf27Q9GZN8 174 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 SRMSQ9H3Y6 488 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 NOL11Q9H8H0 719 aaKnown RBP8.95□□□□□ -0.98
USP4-202ENST00000351842 MID1IP1Q9NPA3 183 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 LNPEPQ9UIQ6 1025 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 PCDHGA2Q9Y5H1 932 aa8.95□□□□□ -0.98
USP4-202ENST00000351842 NUP214P35658 2090 aaPredicted RBP8.94□□□□□ -0.98
USP4-202ENST00000351842 A0A0G2JN53 185 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 A0A0G2JND7 137 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 LOC105378220A0A1B0GUY1 285 aaPredicted RBP8.94□□□□□ -0.98
USP4-202ENST00000351842 TRIM38O00635 465 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 KPNA5O15131 536 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 ZWINTO95229 277 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 C1orf105O95561 183 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 NEK2P51955 445 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 KPNA2P52292 529 aaKnown RBP8.94□□□□□ -0.98
USP4-202ENST00000351842 ADARP55265 1226 aaKnown RBP8.94□□□□□ -0.98
USP4-202ENST00000351842 BTKQ06187 659 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 DUOXA1Q1HG43 343 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 TSNAXIP1Q2TAA8 658 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 DEFB110Q30KQ9 67 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 PLEKHS1Q5SXH7 462 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 CES4AQ5XG92 561 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 NXNQ6DKJ4 435 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 ADNP2Q6IQ32 1131 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 AGTRAPQ6RW13 159 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 CPLX4Q7Z7G2 160 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 PDZD3Q86UT5 571 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 PACS2Q86VP3 889 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 SDR16C5Q8N3Y7 309 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 RHBDD1Q8TEB9 315 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 ZNF480Q8WV37 535 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 MANSC1Q9H8J5 431 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 NPHS2Q9NP85 383 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 INTS7Q9NVH2 962 aaKnown RBP8.94□□□□□ -0.98
USP4-202ENST00000351842 SPHK1Q9NYA1 384 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 GIMAP2Q9UG22 337 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 CORO1CQ9ULV4 474 aaPredicted RBP8.94□□□□□ -0.98
USP4-202ENST00000351842 DMXL2Q8TDJ6 3036 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 HEATR5BQ9P2D3 2071 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 C4orf47A7E2U8 309 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 G3V2L1 256 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 PPM1DO15297 605 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 IPO13O94829 963 aaKnown RBP8.94□□□□□ -0.98
USP4-202ENST00000351842 SLCO2B1O94956 709 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 FAM107AO95990 144 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 BPGMP07738 259 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 MTHFD2P13995 350 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 ATP6V0D1P61421 351 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 TBPL1P62380 186 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 CYP4F3Q08477 520 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 STX3Q13277 289 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 BCL7AQ4VC05 210 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 TNFAIP8L3Q5GJ75 292 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 TIFABQ6ZNK6 161 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 BMP8AQ7Z5Y6 402 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 CLEC14AQ86T13 490 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 DDIASQ8IXT1 998 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 SLC22A15Q8IZD6 547 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 RCBTB1Q8NDN9 531 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 ACMSDQ8TDX5 336 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 GLMNQ92990 594 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 ATOH8Q96SQ7 321 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 ACTR8Q9H981 624 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 PNPOQ9NVS9 261 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 HRASLS2Q9NWW9 162 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 TRNAU1APQ9NX07 287 aaKnown RBP8.94□□□□□ -0.98
USP4-202ENST00000351842 LRIT1Q9P2V4 623 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 OPTCQ9UBM4 332 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 SLC6A14Q9UN76 642 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 SH2B3Q9UQQ2 575 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 BOD1L1Q8NFC6 3051 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 APC2O95996 2303 aa8.94□□□□□ -0.98
USP4-202ENST00000351842 CCDC163A0A0D9SF12 145 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 FEZF1A0PJY2 475 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 H7BY64 318 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 SAP18O00422 153 aaKnown RBP8.93□□□□□ -0.98
USP4-202ENST00000351842 ARHGAP33O14559 1287 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 SIGLEC6O43699 453 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 TRIM13O60858 407 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 KERAO60938 352 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 ENO3P13929 434 aaPredicted RBP8.93□□□□□ -0.98
USP4-202ENST00000351842 VARSP26640 1264 aaKnown RBP8.93□□□□□ -0.98
USP4-202ENST00000351842 OR1D5P58170 312 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 AGERQ15109 404 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 ARL13AQ5H913 290 aaPredicted RBP8.93□□□□□ -0.98
USP4-202ENST00000351842 SH2D4BQ5SQS7 431 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 CATSPEREQ5SY80 951 aa8.93□□□□□ -0.98
USP4-202ENST00000351842 DGLUCYQ7Z3D6 616 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms