RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 L3MBTL4Q8NA19 623 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 PPP3R2Q96LZ3 170 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 ZDHHC5Q9C0B5 715 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 BRINP2Q9C0B6 783 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 ELOVL6Q9H5J4 265 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 PRPF19Q9UMS4 504 aaKnown RBP13.01□□□□□ -0.33
HMGB1-202ENST00000339872 SNX6Q9UNH7 406 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 ASF1AQ9Y294 204 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 CCL27Q9Y4X3 112 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 POLR3HQ9Y535 204 aaPredicted RBP13.01□□□□□ -0.33
HMGB1-202ENST00000339872 GPR89AB7ZAQ6 455 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 E7EQ34 232 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 MRASO14807 208 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 NRP2O60462 931 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 PRAMEF4O60810 478 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 PDYNP01213 254 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 GPR89BP0CG08 455 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 SRFP11831 508 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 IRF8Q02556 426 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 EMX2Q04743 252 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 RPA4Q13156 261 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 PRAMEF9Q5VWM5 478 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 PGM2L1Q6PCE3 622 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 CHST15Q7LFX5 561 aaPredicted RBP13.01□□□□□ -0.33
HMGB1-202ENST00000339872 TRIM46Q7Z4K8 759 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 HPS6Q86YV9 775 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 SYTL1Q8IYJ3 562 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 FBXW8Q8N3Y1 598 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 FLCNQ8NFG4 579 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 OR56A3Q8NH54 315 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 ZNF480Q8WV37 535 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 SELENOMQ8WWX9 145 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 MSANTD3Q96H12 275 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 PACSIN3Q9UKS6 424 aa13.01□□□□□ -0.33
HMGB1-202ENST00000339872 H0Y3Z8 333 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 SLC2A4P14672 509 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 CAPN3P20807 821 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 ERFP50548 548 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 MTTPP55157 894 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 UFM1P61960 85 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 TBPL1P62380 186 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 SFSWAPQ12872 951 aaKnown RBP13□□□□□ -0.33
HMGB1-202ENST00000339872 TDGQ13569 410 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 TSTA3Q13630 321 aaPredicted RBP13□□□□□ -0.33
HMGB1-202ENST00000339872 SMAD2Q15796 467 aaKnown RBP13□□□□□ -0.33
HMGB1-202ENST00000339872 RFTN2Q52LD8 501 aaPredicted RBP13□□□□□ -0.33
HMGB1-202ENST00000339872 PDCD4Q53EL6 469 aaKnown RBP13□□□□□ -0.33
HMGB1-202ENST00000339872 XKR6Q5GH73 641 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 HABP4Q5JVS0 413 aaKnown RBP13□□□□□ -0.33
HMGB1-202ENST00000339872 TMEM31Q5JXX7 168 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 LAYNQ6UX15 382 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 UNC5DQ6UXZ4 953 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 HOMEZQ8IX15 550 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 RGL4Q8IZJ4 473 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 OR9A1PQ8NGU1 263 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 HMGB4Q8WW32 186 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 STMN2Q93045 179 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 TEX37Q96LM6 180 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 OR4K3Q96R72 315 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 CDRT15Q96T59 188 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 NOP53Q9NZM5 478 aaKnown RBP13□□□□□ -0.33
HMGB1-202ENST00000339872 MOSPD1Q9UJG1 213 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 DNMT3AQ9Y6K1 912 aaPredicted RBP13□□□□□ -0.33
HMGB1-202ENST00000339872 BBIP1A8MTZ0 92 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 ANGPT2O15123 496 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 ACP5P13686 325 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 JUPP14923 745 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 GABRG2P18507 467 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 CCND1P24385 295 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 ACSL1P33121 698 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 DPP6P42658 865 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 MRPL19P49406 292 aaKnown RBP13□□□□□ -0.33
HMGB1-202ENST00000339872 TPMTP51580 245 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 NEK2P51955 445 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 GRIK2Q13002 908 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 LRP8Q14114 963 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 VPS26BQ4G0F5 336 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 IL23RQ5VWK5 629 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 Q6ZS52 159 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 KLHDC8AQ8IYD2 350 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 OR5AR1Q8NGP9 310 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 HLA-CQ95604 372 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 MAGEB10Q96LZ2 347 aaPredicted RBP13□□□□□ -0.33
HMGB1-202ENST00000339872 SERPINI1Q99574 410 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 APOOQ9BUR5 198 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 ACPTQ9BZG2 426 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 OSGEPL1Q9H4B0 414 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 RNPEPL1Q9HAU8 725 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 SLC2A4RGQ9NR83 387 aa13□□□□□ -0.33
HMGB1-202ENST00000339872 CACNB4O00305 520 aaPredicted RBP12.99□□□□□ -0.33
HMGB1-202ENST00000339872 SEC22BO75396 215 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 SLC22A3O75751 556 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 FUCA1P04066 466 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 G6PDP11413 515 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 RPL10P27635 214 aaKnown RBP12.99□□□□□ -0.33
HMGB1-202ENST00000339872 GNPDA1P46926 289 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 KCNK10P57789 538 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 ACTR3P61158 418 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 LIPJQ5W064 366 aa12.99□□□□□ -0.33
HMGB1-202ENST00000339872 METRNLQ641Q3 311 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms