RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 NTMT1Q9BV86 223 aa14.27□□□□□ -0.12
CBX3-201ENST00000337620 NUSAP1Q9BXS6 441 aaKnown RBP14.27□□□□□ -0.12
CBX3-201ENST00000337620 MIR1-1HGQ9H1L0 117 aa14.27□□□□□ -0.12
CBX3-201ENST00000337620 TUBB1Q9H4B7 451 aa14.27□□□□□ -0.12
CBX3-201ENST00000337620 ACTR8Q9H981 624 aa14.27□□□□□ -0.12
CBX3-201ENST00000337620 TRIM33Q9UPN9 1127 aa14.27□□□□□ -0.12
CBX3-201ENST00000337620 RNF11Q9Y3C5 154 aa14.27□□□□□ -0.12
CBX3-201ENST00000337620 GON4LQ3T8J9 2241 aa14.27□□□□□ -0.12
CBX3-201ENST00000337620 PRR19A6NJB7 356 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 OR52A4PA6NMU1 304 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 MEI4A8MW99 385 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 CLDN9O95484 217 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 TNFP01375 233 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 EBLN1P0CF75 366 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 HMOX2P30519 316 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 KRT33BQ14525 404 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 UAP1L1Q3KQV9 507 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 ZNF542PQ5EBM4 170 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 METTL21CQ5VZV1 264 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 SLC30A9Q6PML9 568 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 TBC1D21Q8IYX1 336 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 OR56A3Q8NH54 315 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 HSPA12BQ96MM6 686 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 IL17FQ96PD4 163 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 PCED1AQ9H1Q7 454 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 CAAP1Q9H8G2 361 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 SAR1AQ9NR31 198 aa14.27□□□□□ -0.13
CBX3-201ENST00000337620 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 SPTY2D1-AS1A0A0U1RR47 76 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 FFAR3O14843 346 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 GPR42O15529 346 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 BCKDHBP21953 392 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 ACTR1BP42025 376 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 MAGEA9P43362 315 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 PNLIPRP1P54315 467 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 ACTR1AP61163 376 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 CDC16Q13042 620 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 LRP8Q14114 963 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 GRB7Q14451 532 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 TMEM198Q66K66 360 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 SLC36A4Q6YBV0 504 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 EFL1Q7Z2Z2 1120 aaKnown RBP14.26□□□□□ -0.13
CBX3-201ENST00000337620 TMEFF1Q8IYR6 380 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 C2orf73Q8N5S3 287 aaPredicted RBP14.26□□□□□ -0.13
CBX3-201ENST00000337620 ACTRT2Q8TDY3 377 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 TBC1D29Q9UFV1 150 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 LNPEPQ9UIQ6 1025 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 DNAH14Q0VDD8 3507 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 ENO1P06733 434 aaKnown RBP14.26□□□□□ -0.13
CBX3-201ENST00000337620 HALP42357 657 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 TBPL1P62380 186 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 BNIP1Q12981 228 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 FASTKQ14296 549 aaKnown RBP14.26□□□□□ -0.13
CBX3-201ENST00000337620 CAPN13Q6MZZ7 669 aaPredicted RBP14.26□□□□□ -0.13
CBX3-201ENST00000337620 IL27RAQ6UWB1 636 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 SUSD1Q6UWL2 747 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 LAYNQ6UX15 382 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 STON2Q8WXE9 905 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 MARK4Q96L34 752 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 CATSPER2Q96P56 530 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 NRTNQ99748 197 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 TRNAU1APQ9NX07 287 aaKnown RBP14.26□□□□□ -0.13
CBX3-201ENST00000337620 SCHIP1Q9P0W5 487 aaPredicted RBP14.26□□□□□ -0.13
CBX3-201ENST00000337620 DGKBQ9Y6T7 804 aa14.26□□□□□ -0.13
CBX3-201ENST00000337620 ATXN2Q99700 1313 aaKnown RBP14.26□□□□□ -0.13
CBX3-201ENST00000337620 E7ENX8 843 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 CLGNO14967 610 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 DCXO43602 365 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 CBX6O95503 412 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 CD38P28907 300 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 TAP2Q03519 686 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 EIF2B5Q13144 721 aaKnown RBP14.25□□□□□ -0.13
CBX3-201ENST00000337620 CHIT1Q13231 466 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 FZD2Q14332 565 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 CPSF6Q16630 551 aaKnown RBP eCLIP14.25□□□□□ -0.13
CBX3-201ENST00000337620 LACTB2Q53H82 288 aaPredicted RBP14.25□□□□□ -0.13
CBX3-201ENST00000337620 FAM174AQ8TBP5 190 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 TUBGCP3Q96CW5 907 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 OR4K3Q96R72 315 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 HBEGFQ99075 208 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 CCDC106Q9BWC9 280 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 TCEAL2Q9H3H9 227 aaPredicted RBP14.25□□□□□ -0.13
CBX3-201ENST00000337620 AKTIPQ9H8T0 292 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 PFDN4Q9NQP4 134 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 TRPS1Q9UHF7 1281 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 ABCA7Q8IZY2 2146 aa14.25□□□□□ -0.13
CBX3-201ENST00000337620 PRR5-ARHGAP8B1AHC4 643 aa14.24□□□□□ -0.13
CBX3-201ENST00000337620 EML2O95834 649 aa14.24□□□□□ -0.13
CBX3-201ENST00000337620 AOC1P19801 751 aa14.24□□□□□ -0.13
CBX3-201ENST00000337620 HTR6P50406 440 aa14.24□□□□□ -0.13
CBX3-201ENST00000337620 IRF8Q02556 426 aa14.24□□□□□ -0.13
CBX3-201ENST00000337620 ILF3Q12906 894 aaKnown RBP eCLIP14.24□□□□□ -0.131e-7■■■■□ 21.9
CBX3-201ENST00000337620 RPE65Q16518 533 aa14.24□□□□□ -0.13
CBX3-201ENST00000337620 THEMIS2Q5TEJ8 643 aa14.24□□□□□ -0.13
CBX3-201ENST00000337620 MAMSTRQ6ZN01 415 aa14.24□□□□□ -0.13
CBX3-201ENST00000337620 LARP4Q71RC2 724 aaKnown RBP eCLIP14.24□□□□□ -0.135e-13■■□□□ 14.4
CBX3-201ENST00000337620 ARMCX6Q7L4S7 300 aa14.24□□□□□ -0.13
CBX3-201ENST00000337620 TREML1Q86YW5 311 aa14.24□□□□□ -0.13
CBX3-201ENST00000337620 KLHDC8AQ8IYD2 350 aa14.24□□□□□ -0.13
CBX3-201ENST00000337620 RGL4Q8IZJ4 473 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms