RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 RUVBL2Q9Y230 463 aaKnown RBP13.55□□□□□ -0.24
LIMS1-201ENST00000332345 BTRCQ9Y297 605 aa13.55□□□□□ -0.24
LIMS1-201ENST00000332345 SDK2Q58EX2 2172 aa13.55□□□□□ -0.24
LIMS1-201ENST00000332345 A0A0J9YY10 115 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 ZNF839A8K0R7 811 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 GFYI3L273 518 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 SPAG6O75602 509 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 EBLN1P0CF75 366 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 ST6GAL1P15907 406 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 BDKRB1P46663 353 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 ATP1A2P50993 1020 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 CDKN2DP55273 166 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 IL2P60568 153 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 PDAP1Q13442 181 aaKnown RBP13.54□□□□□ -0.24
LIMS1-201ENST00000332345 KCNAB1Q14722 419 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 SF1Q15637 639 aaKnown RBP13.54□□□□□ -0.24
LIMS1-201ENST00000332345 SLC5A12Q1EHB4 618 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 RBM20Q5T481 1227 aaKnown RBP13.54□□□□□ -0.24
LIMS1-201ENST00000332345 HECTD2Q5U5R9 776 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 FBXO38Q6PIJ6 1188 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 C19orf48Q6RUI8 117 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 PAQR3Q6TCH7 311 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 ZC3HC1Q86WB0 502 aaKnown RBP13.54□□□□□ -0.24
LIMS1-201ENST00000332345 CPNE9Q8IYJ1 553 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 C2orf73Q8N5S3 287 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-201ENST00000332345 FBXO15Q8NCQ5 510 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-201ENST00000332345 EEF1AKMT1Q8WVE0 214 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 IFT81Q8WYA0 676 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 TCTN2Q96GX1 697 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 ELMO2Q96JJ3 720 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 IL17FQ96PD4 163 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 CCNL2Q96S94 520 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-201ENST00000332345 MENTQ9BUN1 341 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 SPRY4Q9C004 299 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 TWSG1Q9GZX9 223 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 ZDHHC18Q9NUE0 388 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 SPATA7Q9P0W8 599 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 SLC17A6Q9P2U8 582 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 CIDEBQ9UHD4 219 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 DMGDHQ9UI17 866 aaKnown RBP13.54□□□□□ -0.24
LIMS1-201ENST00000332345 SERTAD3Q9UJW9 196 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 PILRAQ9UKJ1 303 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 TMEM184BQ9Y519 407 aaPredicted RBP13.54□□□□□ -0.24
LIMS1-201ENST00000332345 ZZEF1O43149 2961 aa13.54□□□□□ -0.24
LIMS1-201ENST00000332345 ADAMTS20P59510 1910 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 ANKRD12Q6UB98 2062 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 TCRBV9S1A1TA0A576 114 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 ARHGEF33A8MVX0 844 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 STK17BO94768 372 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 FKBP9O95302 570 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 MSL3P1P0C860 447 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 TMPRSS3P57727 454 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 TIAL1Q01085 375 aaKnown RBP eCLIP13.53□□□□□ -0.24
LIMS1-201ENST00000332345 ARHGAP19Q14CB8 494 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 TGIF1Q15583 401 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 CYP2A13Q16696 494 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 CCSMST1Q4G0I0 132 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 MANEAQ5SRI9 462 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 UBE2R2Q712K3 238 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-201ENST00000332345 CACNA2D3Q8IZS8 1091 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 NLGN4XQ8N0W4 816 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 MYO1HQ8N1T3 1032 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 IL22RA1Q8N6P7 574 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 LINC01555Q8NAE3 123 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 NLGN4YQ8NFZ3 816 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-201ENST00000332345 HMGCLL1Q8TB92 370 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 MCOLN3Q8TDD5 553 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 N4BP2L2Q92802 583 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-201ENST00000332345 NKD1Q969G9 470 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 VPS39Q96JC1 886 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 ULBP3Q9BZM4 244 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 CHRNA10Q9GZZ6 450 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 LRRC4CQ9HCJ2 640 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 INTS7Q9NVH2 962 aaKnown RBP13.53□□□□□ -0.24
LIMS1-201ENST00000332345 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.53□□□□□ -0.24
LIMS1-201ENST00000332345 PSAT1Q9Y617 370 aa13.53□□□□□ -0.24
LIMS1-201ENST00000332345 DSPP15924 2871 aaKnown RBP13.52□□□□□ -0.24
LIMS1-201ENST00000332345 FAM159BA6NKW6 160 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 MYO1CO00159 1063 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 MT-ND3P03897 115 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 C8GP07360 202 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 CCNYL3P0C7X3 344 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 PVRP15151 417 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 CYP2A7P20853 494 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 SAT1P21673 171 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 FDXRP22570 491 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 OAS2P29728 719 aaKnown RBP13.52□□□□□ -0.25
LIMS1-201ENST00000332345 STX2P32856 288 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 SLC12A2P55011 1212 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 GPX6P59796 221 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 MAP7Q14244 749 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 GPR19Q15760 415 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 COL28A1Q2UY09 1125 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 C6orf15Q6UXA7 325 aaPredicted RBP13.52□□□□□ -0.25
LIMS1-201ENST00000332345 CCDC81Q6ZN84 652 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 TRIM73Q86UV7 250 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 ESX1Q8N693 406 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 C19orf47Q8N9M1 422 aaKnown RBP13.52□□□□□ -0.25
LIMS1-201ENST00000332345 LMNTD1Q8N9Z9 388 aa13.52□□□□□ -0.25
LIMS1-201ENST00000332345 FLVCR1-AS1Q8TAF5 88 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms