RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 AFF3P51826 1226 aaKnown RBP4.76□□□□□ -1.65
CSMD3-201ENST00000297405 PROX2Q3B8N5 592 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 LLGL2Q6P1M3 1020 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 CERS6Q6ZMG9 384 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 BEND7Q8N7W2 519 aaPredicted RBP4.76□□□□□ -1.65
CSMD3-201ENST00000297405 PABPC5Q96DU9 382 aaKnown RBP4.76□□□□□ -1.65
CSMD3-201ENST00000297405 PCDHGA5Q9Y5G8 931 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 H7C417 338 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 FGBP02675 491 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 CXCR4P61073 352 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 ERVK-9P63128 1117 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 RHDQ02161 417 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 MAP4K2Q12851 820 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 GRAPQ13588 217 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 PRAMEF13Q5VWM6 474 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF470Q6ECI4 717 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 C12orf40Q86WS4 652 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 TAB3Q8N5C8 712 aaPredicted RBP4.76□□□□□ -1.65
CSMD3-201ENST00000297405 ZSCAN18Q8TBC5 510 aaPredicted RBP4.76□□□□□ -1.65
CSMD3-201ENST00000297405 CNOT9Q92600 299 aaKnown RBP4.76□□□□□ -1.65
CSMD3-201ENST00000297405 CIB1Q99828 191 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF804BA4D1E1 1349 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 SOBPA7XYQ1 873 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 INMTO95050 263 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 PRKCGP05129 697 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 ADRA1DP25100 572 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 PEX2P28328 305 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 MAP2K3P46734 347 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 IDH3GP51553 393 aaPredicted RBP4.76□□□□□ -1.65
CSMD3-201ENST00000297405 PGM5Q15124 567 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 LRRC41Q15345 812 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 PPP2R2DQ66LE6 453 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 LMBRD2Q68DH5 695 aaPredicted RBP4.76□□□□□ -1.65
CSMD3-201ENST00000297405 LPCAT3Q6P1A2 487 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 NOTUMQ6P988 496 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 ARHGAP12Q8IWW6 846 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 OR2T11Q8NH01 316 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 CHTF18Q8WVB6 975 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 HAPLN3Q96S86 360 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 MAPKAP1Q9BPZ7 522 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 SC5DO75845 299 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 RARAP10276 462 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 SPP1P10451 314 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 KCNA5P22460 613 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 FMO4P31512 558 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 CDH13P55290 713 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 SORDQ00796 357 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 LRP8Q14114 963 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 CPTPQ5TA50 214 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 FAM46CQ5VWP2 391 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 ELP2Q6IA86 826 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 C16orf46Q6P387 395 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 GHDCQ8N2G8 530 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 RASGEF1CQ8N431 466 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF527Q8NB42 609 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 OR2L3Q8NG85 312 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 TTLL2Q9BWV7 592 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 TUBG2Q9NRH3 451 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 CACFD1Q9UGQ2 172 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 KLHL21Q9UJP4 597 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 ERVW-1Q9UQF0 538 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 RNF6Q9Y252 685 aa4.76□□□□□ -1.65
CSMD3-201ENST00000297405 NPIPA5A0A0B4J1W7 369 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 TCAF2A6NFQ2 919 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 BCAS2O75934 225 aaPredicted RBP4.75□□□□□ -1.65
CSMD3-201ENST00000297405 LATS1O95835 1130 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 CSTF2P33240 577 aaKnown RBP eCLIP4.75□□□□□ -1.65
CSMD3-201ENST00000297405 IGFALSP35858 605 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 CAMK2DQ13557 499 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 GINS1Q14691 196 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 NIPAL3Q6P499 406 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 GCNT7Q6ZNI0 430 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 SLC38A4Q969I6 547 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 NACC2Q96BF6 587 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 SLC39A13Q96H72 371 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 HPDLQ96IR7 371 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 CNTNAP3BQ96NU0 1288 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 ACTRT3Q9BYD9 372 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 POLR2J2Q9GZM3 115 aaKnown RBP4.75□□□□□ -1.65
CSMD3-201ENST00000297405 PAK1IP1Q9NWT1 392 aaPredicted RBP4.75□□□□□ -1.65
CSMD3-201ENST00000297405 COQ3Q9NZJ6 369 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 ZIM2Q9NZV7 527 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 A0A0J9YVX5 310 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 FUOMA2VDF0 154 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF208O43345 1280 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 SGPL1O95470 568 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 CATP04040 527 aaKnown RBP4.75□□□□□ -1.65
CSMD3-201ENST00000297405 URODP06132 367 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 HEXBP07686 556 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 SLC2A4P14672 509 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 RPS3P23396 243 aaKnown RBP eCLIP4.75□□□□□ -1.65
CSMD3-201ENST00000297405 GCSHP23434 173 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 SRSF11Q05519 484 aaKnown RBP4.75□□□□□ -1.65
CSMD3-201ENST00000297405 CTBP1Q13363 440 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 PDIA6Q15084 440 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 ZNF730Q6ZMV8 503 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 DNAJC10Q8IXB1 793 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 SLC15A3Q8IY34 581 aa4.75□□□□□ -1.65
CSMD3-201ENST00000297405 GTPBP8Q8N3Z3 284 aaPredicted RBP4.75□□□□□ -1.65
CSMD3-201ENST00000297405 ELF4Q99607 663 aaPredicted RBP4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms