RNA–Protein interactions for RNA: ENST00000286835.11

SCAF4-201, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SCAF4, Length 4,193 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-201ENST00000286835 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.11□□□□□ -0.314e-8■■■■□ 24.8
SCAF4-201ENST00000286835 PAK1IP1Q9NWT1 392 aaPredicted RBP13.11□□□□□ -0.31
SCAF4-201ENST00000286835 FER1L6Q2WGJ9 1857 aa13.11□□□□□ -0.31
SCAF4-201ENST00000286835 WDR81Q562E7 1941 aa13.11□□□□□ -0.31
SCAF4-201ENST00000286835 LOC730098B7Z3J9 87 aa13.11□□□□□ -0.31
SCAF4-201ENST00000286835 RPL17P18621 184 aaKnown RBP13.11□□□□□ -0.31
SCAF4-201ENST00000286835 CDK5R2Q13319 367 aa13.11□□□□□ -0.31
SCAF4-201ENST00000286835 PLD1Q13393 1074 aa13.11□□□□□ -0.31
SCAF4-201ENST00000286835 VTCN1Q7Z7D3 282 aa13.11□□□□□ -0.31
SCAF4-201ENST00000286835 ZNF605Q86T29 641 aa13.11□□□□□ -0.31
SCAF4-201ENST00000286835 UMODL1-AS1Q8N2C9 162 aa13.11□□□□□ -0.31
SCAF4-201ENST00000286835 GOLM1Q8NBJ4 401 aa13.11□□□□□ -0.31
SCAF4-201ENST00000286835 UBE2FQ969M7 185 aa13.11□□□□□ -0.31
SCAF4-201ENST00000286835 DACT3Q96B18 629 aaPredicted RBP13.11□□□□□ -0.31
SCAF4-201ENST00000286835 DUS3LQ96G46 650 aaKnown RBP13.11□□□□□ -0.31
SCAF4-201ENST00000286835 ATG10Q9H0Y0 220 aa13.11□□□□□ -0.31
SCAF4-201ENST00000286835 OSER1Q9NX31 292 aa13.11□□□□□ -0.31
SCAF4-201ENST00000286835 ENPP5Q9UJA9 477 aa13.11□□□□□ -0.31
SCAF4-201ENST00000286835 COQ9O75208 318 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 SOAT1P35610 550 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 SOX6P35712 828 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 INPP1P49441 399 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 PRIM2P49643 509 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 TLE2Q04725 743 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 SERINC3Q13530 473 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 TP53BP2Q13625 1128 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 CLCA4Q14CN2 919 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 OR4F3Q6IEY1 312 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 RBM23Q86U06 439 aaKnown RBP13.1□□□□□ -0.31
SCAF4-201ENST00000286835 RHNO1Q9BSD3 238 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 TRIM39Q9HCM9 518 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 GIMAP4Q9NUV9 329 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 DYTNA2CJ06 578 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 A6NL46 340 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 AQP9O43315 295 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 PRAMEF1O95521 474 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 OPN1SWP03999 348 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 ATXN1LP0C7T5 689 aaKnown RBP13.1□□□□□ -0.31
SCAF4-201ENST00000286835 TCEA1P23193 301 aaKnown RBP13.1□□□□□ -0.31
SCAF4-201ENST00000286835 TAB1Q15750 504 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 KCNJ8Q15842 424 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 INO80DQ53TQ3 878 aaPredicted RBP13.1□□□□□ -0.31
SCAF4-201ENST00000286835 GPR156Q8NFN8 814 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 ARRDC2Q8TBH0 407 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 UBASH3BQ8TF42 649 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 ZNF296Q8WUU4 475 aaPredicted RBP13.1□□□□□ -0.31
SCAF4-201ENST00000286835 TMEM161AQ9NX61 479 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 ITGB1BP2Q9UKP3 347 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 BTBD3Q9Y2F9 522 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 TCRBV5S2A0A599 114 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 ASPDHA6ND91 283 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 VIPP01282 170 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 BMP4P12644 408 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 RPS3AP61247 264 aaKnown RBP13.1□□□□□ -0.31
SCAF4-201ENST00000286835 RPS14P62263 151 aaKnown RBP13.1□□□□□ -0.31
SCAF4-201ENST00000286835 TSPEARQ8WU66 669 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 MED8Q96G25 268 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 MCMBPQ9BTE3 642 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 ATP13A3Q9H7F0 1226 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 SPASTQ9UBP0 616 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 SLC28A1O00337 649 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 FABP3P05413 133 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 RPS17P08708 135 aaKnown RBP13.1□□□□□ -0.31
SCAF4-201ENST00000286835 DGKAP23743 735 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 CRATP43155 626 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 NFKB2Q00653 900 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 RUNX1T1Q06455 604 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 TTLL9Q3SXZ7 439 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 PLEKHG7Q6ZR37 379 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 RGL4Q8IZJ4 473 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 TANKQ92844 425 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 ZNF583Q96ND8 569 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 DEPDC7Q96QD5 511 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 DPH2Q9BQC3 489 aaPredicted RBP13.1□□□□□ -0.31
SCAF4-201ENST00000286835 OSBPL10Q9BXB5 764 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 ARNT2Q9HBZ2 717 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 NUDT4Q9NZJ9 180 aa13.1□□□□□ -0.31
SCAF4-201ENST00000286835 CAB39Q9Y376 341 aaPredicted RBP13.1□□□□□ -0.31
SCAF4-201ENST00000286835 HTR7P34969 479 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 EPHB3P54753 998 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 COQ5Q5HYK3 327 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 OR2T5Q6IEZ7 315 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 SERPINA9Q86WD7 417 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 DCP2Q8IU60 420 aaKnown RBP13.09□□□□□ -0.31
SCAF4-201ENST00000286835 OR2T29Q8NH02 315 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 PYURFQ96I23 114 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 CORO1BQ9BR76 489 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 GPN2Q9H9Y4 310 aaPredicted RBP13.09□□□□□ -0.31
SCAF4-201ENST00000286835 TMEM248Q9NWD8 314 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 SAMD4AQ9UPU9 718 aaKnown RBP13.09□□□□□ -0.31
SCAF4-201ENST00000286835 FCF1Q9Y324 198 aaKnown RBP13.09□□□□□ -0.31
SCAF4-201ENST00000286835 PCDHB14Q9Y5E9 798 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 LOC110117498-PIK3R3F6TDL0 507 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 STX16O14662 325 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 STK16O75716 305 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 RGRP47804 291 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 YBEYP58557 167 aaPredicted RBP13.09□□□□□ -0.31
SCAF4-201ENST00000286835 TAF1AQ15573 450 aaPredicted RBP13.09□□□□□ -0.31
SCAF4-201ENST00000286835 CYP27C1Q4G0S4 372 aa13.09□□□□□ -0.31
SCAF4-201ENST00000286835 ZNF382Q96SR6 550 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms