RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CD36P16671 472 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 DPY19L1Q2PZI1 675 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 CHRFAM7AQ494W8 412 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 IQCHQ86VS3 1027 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 MRPL45Q9BRJ2 306 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 SEMA6BQ9H3T3 888 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 ZNF609O15014 1411 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 PIP5K1CO60331 668 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 SPAM1P38567 509 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 LIN52Q52LA3 116 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 TATDN1Q6P1N9 297 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 PGAP3Q96FM1 320 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 MYH1P12882 1939 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 MYH2Q9UKX2 1941 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 MYH4Q9Y623 1939 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 OR1F1O43749 312 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 GABBR2O75899 941 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 INSRRP14616 1297 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 AKR1C8PQ5T2L2 129 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC22A17Q8WUG5 538 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 CLCA3PQ9Y6N3 262 aa13.68□□□□□ -0.22
CCDC88A-201ENST00000263630 PXDNLA1KZ92 1463 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 TPST2O60704 377 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 KCNJ13O60928 360 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 IL33O95760 270 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 IL3P08700 152 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 AKR1A1P14550 325 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 GK5Q6ZS86 529 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 PHTF2Q8N3S3 785 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 SHKBP1Q8TBC3 707 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 MTMR9Q96QG7 549 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 DHX33Q9H6R0 707 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 TMEM45AQ9NWC5 275 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 FBXW2Q9UKT8 454 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 SPHKAPQ2M3C7 1700 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 ERCC1P07992 297 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 RAP2AP10114 183 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 TCEA1P23193 301 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 CCNFP41002 786 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 NCEH1Q6PIU2 408 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC22A8Q8TCC7 542 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 HHATLQ9HCP6 504 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 LAMP5Q9UJQ1 280 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 CMAHPQ9Y471 501 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 TESMINQ9Y4I5 508 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 RCBTB2O95199 551 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 SRPRAP08240 638 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 CD72P21854 359 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 LTKP29376 864 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 NRG1Q02297 640 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 SMIM15Q7Z3B0 74 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 NPLQ9BXD5 320 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 VNN3Q9NY84 501 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 EPHB6O15197 1021 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC22A2O15244 555 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 AGXTP21549 392 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 CDK3Q00526 305 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 ASPNQ9BXN1 380 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 DUSP16Q9BY84 665 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 FBXO5Q9UKT4 447 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 PCCBP05166 539 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 CTPS1P17812 591 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 CDH11P55287 796 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC1A5Q15758 541 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 ZC3H12AQ5D1E8 599 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 TRIM74Q86UV6 250 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 TRIM73Q86UV7 250 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 ERI1Q8IV48 349 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 TERB2Q8NHR7 220 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 RNF157Q96PX1 679 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 FEM1AQ9BSK4 669 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 GNSP15586 552 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 MAMLD1Q13495 774 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 GALNT12Q8IXK2 581 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 CBR4Q8N4T8 237 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 FBXO15Q8NCQ5 510 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 STK35Q8TDR2 534 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 DGAT2Q96PD7 388 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 LRFN1Q9P244 771 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 ARHGAP20Q9P2F6 1191 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 CDC14AQ9UNH5 594 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 ICKQ9UPZ9 632 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 E9PAM4 449 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 ANXA8P13928 327 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 GMPSP49915 693 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 CDK18Q07002 472 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 KCTD19Q17RG1 926 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 LPCAT4Q643R3 524 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 METTL25Q8N6Q8 603 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 MOAP1Q96BY2 351 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 POLR2J3Q9H1A7 115 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 PCTPQ9UKL6 214 aa13.67□□□□□ -0.22
CCDC88A-201ENST00000263630 CAPN8A6NHC0 703 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 LRRC72A6NJI9 287 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC5A3P53794 718 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 FAM86B1Q8N7N1 296 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 ELMO3Q96BJ8 720 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 SLC30A2Q9BRI3 323 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 ACSS3Q9H6R3 686 aa13.66□□□□□ -0.22
CCDC88A-201ENST00000263630 P2RX2Q9UBL9 471 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms