RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 FFAR2O15552 330 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 GOT2P00505 430 aaKnown RBP4.23□□□□□ -1.73
VPS13C-202ENST00000261517 ANXA4P09525 319 aaPredicted RBP4.23□□□□□ -1.73
VPS13C-202ENST00000261517 SP100P23497 879 aaPredicted RBP4.23□□□□□ -1.73
VPS13C-202ENST00000261517 SOX10P56693 466 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 PPP3R1P63098 170 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 SCN1BQ07699 218 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 SLC36A3Q495N2 470 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 PTCHD4Q6ZW05 846 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 ZSCAN1Q8NBB4 408 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 SLC43A3Q8NBI5 491 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 TSEN2Q8NCE0 465 aaKnown RBP4.23□□□□□ -1.73
VPS13C-202ENST00000261517 KCNS3Q9BQ31 491 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 B3GNT5Q9BYG0 378 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 INSL5Q9Y5Q6 135 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 SCN4AP35499 1836 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 DLDP09622 509 aaKnown RBP4.23□□□□□ -1.73
VPS13C-202ENST00000261517 GIMD1P0DJR0 217 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 STC1P52823 247 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 ARPC4P59998 168 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 LIPEQ05469 1076 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 UPP1Q16831 310 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 ATCAYQ86WG3 371 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 PLPP6Q8IY26 295 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 FSTL5Q8N475 847 aaPredicted RBP4.23□□□□□ -1.73
VPS13C-202ENST00000261517 CDYL2Q8N8U2 506 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 TDP1Q9NUW8 608 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 PGLSO95336 258 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 HOXD8P13378 290 aaPredicted RBP4.23□□□□□ -1.73
VPS13C-202ENST00000261517 ACTC1P68032 377 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 ACTA1P68133 377 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 DUOXA1Q1HG43 343 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 SLC29A4Q7RTT9 530 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 FAM98AQ8NCA5 519 aaKnown RBP4.23□□□□□ -1.73
VPS13C-202ENST00000261517 SEPHS2Q99611 448 aa4.23□□□□□ -1.73
VPS13C-202ENST00000261517 ANKRD66B4E2M5 251 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 EPHX1P07099 455 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 RPS14P62263 151 aaKnown RBP4.22□□□□□ -1.73
VPS13C-202ENST00000261517 DSG2Q14126 1118 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 FBXO46Q6PJ61 603 aaPredicted RBP4.22□□□□□ -1.73
VPS13C-202ENST00000261517 ARHGAP12Q8IWW6 846 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 CPXM2Q8N436 756 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 LRRC17Q8N6Y2 441 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 ZNF540Q8NDQ6 660 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 C7orf43Q8WVR3 580 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 PIH1D2Q8WWB5 315 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 BRI3BPQ8WY22 251 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 HDAC2Q92769 488 aaKnown RBP4.22□□□□□ -1.73
VPS13C-202ENST00000261517 SLC35G5Q96KT7 338 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 C12orf66Q96MD2 445 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 MYO5AQ9Y4I1 1855 aaKnown RBP4.22□□□□□ -1.73
VPS13C-202ENST00000261517 M0QZQ0 153 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 PEX14O75381 377 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 ATP6V1B1P15313 513 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 SMSP52788 366 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 PRAMEF14Q5SWL7 426 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 PRAMEF13Q5VWM6 474 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 FRG2Q64ET8 278 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 GATAD2AQ86YP4 633 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 PCDH19Q8TAB3 1148 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 BPIFB1Q8TDL5 484 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 PPP1R14AQ96A00 147 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 FRG2BQ96QU4 278 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 GPR21Q99679 349 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 SERTAD3Q9UJW9 196 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 PHF24Q9UPV7 400 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 REXO2Q9Y3B8 237 aaKnown RBP4.22□□□□□ -1.73
VPS13C-202ENST00000261517 KNTC1P50748 2209 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 A0A0J9YVX5 310 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 NPEPPSL1A6NEC2 478 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 B4GALT5O43286 388 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 FOXD2O60548 495 aaPredicted RBP4.22□□□□□ -1.73
VPS13C-202ENST00000261517 UGT2B4P06133 528 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 ERCC1P07992 297 aaPredicted RBP4.22□□□□□ -1.73
VPS13C-202ENST00000261517 CCKBRP32239 447 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 CPA2P48052 419 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 PSMD8P48556 350 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 CYP4F3Q08477 520 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 TSC22D1Q15714 1073 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 TYSND1Q2T9J0 566 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 PNLDC1Q8NA58 520 aaKnown RBP4.22□□□□□ -1.73
VPS13C-202ENST00000261517 ZMIZ2Q8NF64 920 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 GRPEL2Q8TAA5 225 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 ABCG4Q9H172 646 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 MARK1Q9P0L2 795 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 TSR3Q9UJK0 312 aaKnown RBP4.22□□□□□ -1.73
VPS13C-202ENST00000261517 CPQQ9Y646 472 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 PSIP1O75475 530 aaKnown RBP4.22□□□□□ -1.73
VPS13C-202ENST00000261517 C5AR1P21730 350 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 ARCN1P48444 511 aaKnown RBP4.22□□□□□ -1.73
VPS13C-202ENST00000261517 TMPRSS11BQ86T26 416 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 KDM1BQ8NB78 822 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 CD99L2Q8TCZ2 262 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 ZBED3Q96IU2 234 aaPredicted RBP4.22□□□□□ -1.73
VPS13C-202ENST00000261517 PELI2Q9HAT8 420 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 COL20A1Q9P218 1284 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 RGPD3A6NKT7 1758 aaPredicted RBP4.22□□□□□ -1.73
VPS13C-202ENST00000261517 TRIP11Q15643 1979 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 SCGB2A1O75556 95 aa4.22□□□□□ -1.73
VPS13C-202ENST00000261517 PLIN5Q00G26 463 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms