RNA–Protein interactions for RNA: ENST00000640568.1

TSPAN9-208, Transcript of tetraspanin 9, humanhuman

TSL 5

Gene TSPAN9, Length 1,465 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN9-208ENST00000640568 WWC1Q8IX03 1113 aa28.21■■■□□ 2.11
TSPAN9-208ENST00000640568 ILDR2Q71H61 639 aa28.21■■■□□ 2.11
TSPAN9-208ENST00000640568 BCL11BQ9C0K0 894 aaPredicted RBP28.21■■■□□ 2.11
TSPAN9-208ENST00000640568 TNS1Q9HBL0 1735 aaKnown RBP28.18■■■□□ 2.1
TSPAN9-208ENST00000640568 PIGBQ92521 554 aa28.18■■■□□ 2.1
TSPAN9-208ENST00000640568 TAF7Q15545 349 aaPredicted RBP28.17■■■□□ 2.1
TSPAN9-208ENST00000640568 LAS1LQ9Y4W2 734 aaKnown RBP28.17■■■□□ 2.1
TSPAN9-208ENST00000640568 BTBD11A6QL63 1104 aa28.16■■■□□ 2.1
TSPAN9-208ENST00000640568 SF3B2Q13435 895 aaKnown RBP28.16■■■□□ 2.1
TSPAN9-208ENST00000640568 WDR63Q8IWG1 891 aa28.15■■■□□ 2.1
TSPAN9-208ENST00000640568 PAPPAQ13219 1627 aa28.14■■■□□ 2.1
TSPAN9-208ENST00000640568 PTF1AQ7RTS3 328 aa28.14■■■□□ 2.09
TSPAN9-208ENST00000640568 YTHDC1Q96MU7 727 aaKnown RBP28.14■■■□□ 2.09
TSPAN9-208ENST00000640568 KDM3BQ7LBC6 1761 aa28.13■■■□□ 2.09
TSPAN9-208ENST00000640568 TTC5Q8N0Z6 440 aa28.13■■■□□ 2.09
TSPAN9-208ENST00000640568 GNAI1P63096 354 aa28.12■■■□□ 2.09
TSPAN9-208ENST00000640568 TSPYL4Q9UJ04 414 aa28.12■■■□□ 2.09
TSPAN9-208ENST00000640568 SMARCC1Q92922 1105 aaPredicted RBP28.11■■■□□ 2.09
TSPAN9-208ENST00000640568 IFT57Q9NWB7 429 aa28.11■■■□□ 2.09
TSPAN9-208ENST00000640568 IL16Q14005 1332 aa28.11■■■□□ 2.09
TSPAN9-208ENST00000640568 APBA3O96018 575 aa28.1■■■□□ 2.09
TSPAN9-208ENST00000640568 CFAP44Q96MT7 982 aa28.1■■■□□ 2.09
TSPAN9-208ENST00000640568 BABAM1Q9NWV8 329 aa28.1■■■□□ 2.09
TSPAN9-208ENST00000640568 ZNF521Q96K83 1311 aa28.1■■■□□ 2.09
TSPAN9-208ENST00000640568 SLC39A6Q13433 755 aa28.09■■■□□ 2.09
TSPAN9-208ENST00000640568 CCDC125Q86Z20 511 aa28.09■■■□□ 2.09
TSPAN9-208ENST00000640568 ATG3Q9NT62 314 aa28.09■■■□□ 2.09
TSPAN9-208ENST00000640568 MIS18AQ9NYP9 233 aa28.09■■■□□ 2.09
TSPAN9-208ENST00000640568 ASAP1Q9ULH1 1129 aa28.09■■■□□ 2.09
TSPAN9-208ENST00000640568 ZBED9Q6R2W3 1325 aa28.09■■■□□ 2.09
TSPAN9-208ENST00000640568 GOLGA2Q08379 1002 aa28.08■■■□□ 2.09
TSPAN9-208ENST00000640568 UBR2Q8IWV8 1755 aa28.08■■■□□ 2.09
TSPAN9-208ENST00000640568 PALLDQ8WX93 1383 aa28.08■■■□□ 2.09
TSPAN9-208ENST00000640568 ZNF790Q6PG37 636 aa28.08■■■□□ 2.09
TSPAN9-208ENST00000640568 LY75O60449 1722 aa28.07■■■□□ 2.08
TSPAN9-208ENST00000640568 RGPD3A6NKT7 1758 aaPredicted RBP28.06■■■□□ 2.08
TSPAN9-208ENST00000640568 RGPD4Q7Z3J3 1758 aa28.06■■■□□ 2.08
TSPAN9-208ENST00000640568 CHL1O00533 1208 aa28.05■■■□□ 2.08
TSPAN9-208ENST00000640568 BAG6P46379 1132 aa28.05■■■□□ 2.08
TSPAN9-208ENST00000640568 RBM42Q9BTD8 480 aaKnown RBP28.04■■■□□ 2.08
TSPAN9-208ENST00000640568 ZNF853P0CG23 659 aa28.03■■■□□ 2.08
TSPAN9-208ENST00000640568 UPF1Q92900 1129 aaKnown RBP eCLIP28.03■■■□□ 2.08
TSPAN9-208ENST00000640568 MYH16Q9H6N6 1097 aa28.03■■■□□ 2.08
TSPAN9-208ENST00000640568 MBIPQ9NS73 344 aa28.03■■■□□ 2.08
TSPAN9-208ENST00000640568 KCNQ3O43525 872 aa28.02■■■□□ 2.08
TSPAN9-208ENST00000640568 PTCD1O75127 700 aaKnown RBP28.02■■■□□ 2.08
TSPAN9-208ENST00000640568 KCPQ6ZWJ8 1503 aa28.02■■■□□ 2.08
TSPAN9-208ENST00000640568 E9PSI1 815 aa28.02■■■□□ 2.08
TSPAN9-208ENST00000640568 PLSCR1O15162 318 aa28.02■■■□□ 2.08
TSPAN9-208ENST00000640568 FMNL2Q96PY5 1086 aa28.02■■■□□ 2.08
TSPAN9-208ENST00000640568 TSR2Q969E8 191 aaKnown RBP28■■■□□ 2.07
TSPAN9-208ENST00000640568 SPINK5Q9NQ38 1064 aaPredicted RBP27.99■■■□□ 2.07
TSPAN9-208ENST00000640568 FANCIQ9NVI1 1328 aa27.98■■■□□ 2.07
TSPAN9-208ENST00000640568 LOC102724428A0A0B4J2F2 783 aa27.98■■■□□ 2.07
TSPAN9-208ENST00000640568 SIK1P57059 783 aa27.98■■■□□ 2.07
TSPAN9-208ENST00000640568 EN1Q05925 392 aaPredicted RBP27.98■■■□□ 2.07
TSPAN9-208ENST00000640568 ZNF496Q96IT1 587 aaPredicted RBP27.98■■■□□ 2.07
TSPAN9-208ENST00000640568 EIF4A1P60842 406 aaKnown RBP27.97■■■□□ 2.07
TSPAN9-208ENST00000640568 CDCA7LQ96GN5 454 aa27.97■■■□□ 2.07
TSPAN9-208ENST00000640568 CCNL1Q9UK58 526 aaPredicted RBP27.97■■■□□ 2.07
TSPAN9-208ENST00000640568 ZNF831Q5JPB2 1677 aa27.97■■■□□ 2.07
TSPAN9-208ENST00000640568 HEG1Q9ULI3 1381 aa27.97■■■□□ 2.07
TSPAN9-208ENST00000640568 ATP6V1AP38606 617 aa27.96■■■□□ 2.07
TSPAN9-208ENST00000640568 SLFN5Q08AF3 891 aa27.96■■■□□ 2.07
TSPAN9-208ENST00000640568 DEFB132Q7Z7B7 95 aa27.95■■■□□ 2.07
TSPAN9-208ENST00000640568 TXNRD1Q16881 649 aa27.95■■■□□ 2.06
TSPAN9-208ENST00000640568 SLC27A3Q5K4L6 730 aa27.95■■■□□ 2.06
TSPAN9-208ENST00000640568 TAF1LQ8IZX4 1826 aa27.94■■■□□ 2.06
TSPAN9-208ENST00000640568 TJP1Q07157 1748 aa27.94■■■□□ 2.06
TSPAN9-208ENST00000640568 C5P01031 1676 aa27.94■■■□□ 2.06
TSPAN9-208ENST00000640568 VSIG10Q8N0Z9 540 aa27.94■■■□□ 2.06
TSPAN9-208ENST00000640568 LAMB4A4D0S4 1761 aa27.93■■■□□ 2.06
TSPAN9-208ENST00000640568 SNRPA1P09661 255 aaKnown RBP27.93■■■□□ 2.06
TSPAN9-208ENST00000640568 EZH2Q15910 746 aaKnown RBP27.93■■■□□ 2.06
TSPAN9-208ENST00000640568 RREB1Q92766 1687 aa27.92■■■□□ 2.06
TSPAN9-208ENST00000640568 CICQ96RK0 1608 aaPredicted RBP27.92■■■□□ 2.06
TSPAN9-208ENST00000640568 HMGB2P26583 209 aaKnown RBP27.91■■■□□ 2.06
TSPAN9-208ENST00000640568 CAMKK2Q96RR4 588 aa27.91■■■□□ 2.06
TSPAN9-208ENST00000640568 TEX13AQ9BXU3 409 aaPredicted RBP27.9■■■□□ 2.06
TSPAN9-208ENST00000640568 COL5A3P25940 1745 aaPredicted RBP27.9■■■□□ 2.06
TSPAN9-208ENST00000640568 KCNQ4P56696 695 aa27.89■■■□□ 2.06
TSPAN9-208ENST00000640568 SLC4A9Q96Q91 983 aa27.89■■■□□ 2.06
TSPAN9-208ENST00000640568 GIGYF1O75420 1035 aaPredicted RBP27.89■■■□□ 2.05
TSPAN9-208ENST00000640568 EXOSC9Q06265 439 aaKnown RBP27.89■■■□□ 2.05
TSPAN9-208ENST00000640568 KRT24Q2M2I5 525 aa27.89■■■□□ 2.05
TSPAN9-208ENST00000640568 DNAJC10Q8IXB1 793 aa27.89■■■□□ 2.05
TSPAN9-208ENST00000640568 NUP188Q5SRE5 1749 aa27.87■■■□□ 2.05
TSPAN9-208ENST00000640568 ELL2O00472 640 aaPredicted RBP27.87■■■□□ 2.05
TSPAN9-208ENST00000640568 DUSP27Q5VZP5 1158 aa27.87■■■□□ 2.05
TSPAN9-208ENST00000640568 TRMT2AQ8IZ69 625 aaKnown RBP27.87■■■□□ 2.05
TSPAN9-208ENST00000640568 PROM2Q8N271 834 aa27.87■■■□□ 2.05
TSPAN9-208ENST00000640568 LRRC4BQ9NT99 713 aa27.87■■■□□ 2.05
TSPAN9-208ENST00000640568 STARD3NLO95772 234 aa27.86■■■□□ 2.05
TSPAN9-208ENST00000640568 ITPK1Q13572 414 aa27.86■■■□□ 2.05
TSPAN9-208ENST00000640568 C8orf58Q8NAV2 365 aa27.86■■■□□ 2.05
TSPAN9-208ENST00000640568 PRAMEF22A3QJZ6 481 aa27.85■■■□□ 2.05
TSPAN9-208ENST00000640568 HOXB7P09629 217 aa27.85■■■□□ 2.05
TSPAN9-208ENST00000640568 TWISTNBQ3B726 338 aaPredicted RBP27.85■■■□□ 2.05
TSPAN9-208ENST00000640568 C4BP0C0L5 1744 aa27.84■■■□□ 2.05
TSPAN9-208ENST00000640568 SOS1Q07889 1333 aaPredicted RBP27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms