RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 GNAT3A8MTJ3 354 aa24.3■■□□□ 1.48
CLN3-259ENST00000637551 C5P01031 1676 aa24.3■■□□□ 1.48
CLN3-259ENST00000637551 CEMIPQ8WUJ3 1361 aa24.29■■□□□ 1.48
CLN3-259ENST00000637551 SIPA1L3O60292 1781 aaPredicted RBP24.29■■□□□ 1.48
CLN3-259ENST00000637551 CABP4P57796 275 aa24.28■■□□□ 1.48
CLN3-259ENST00000637551 IFFO2Q5TF58 517 aa24.28■■□□□ 1.48
CLN3-259ENST00000637551 RNMTO43148 476 aaKnown RBP24.27■■□□□ 1.48
CLN3-259ENST00000637551 ANP32CO43423 234 aa24.27■■□□□ 1.48
CLN3-259ENST00000637551 PLEKHF1Q96S99 279 aa24.27■■□□□ 1.48
CLN3-259ENST00000637551 SLC52A2Q9HAB3 445 aa24.27■■□□□ 1.48
CLN3-259ENST00000637551 ANO8Q9HCE9 1232 aaPredicted RBP24.27■■□□□ 1.48
CLN3-259ENST00000637551 C1QTNF8P60827 252 aa24.26■■□□□ 1.47
CLN3-259ENST00000637551 PDGFDQ9GZP0 370 aaPredicted RBP24.26■■□□□ 1.47
CLN3-259ENST00000637551 CCNL1Q9UK58 526 aaPredicted RBP24.26■■□□□ 1.47
CLN3-259ENST00000637551 PTGER2P43116 358 aa24.25■■□□□ 1.47
CLN3-259ENST00000637551 PHACTR3Q96KR7 559 aa24.25■■□□□ 1.47
CLN3-259ENST00000637551 STK32BQ9NY57 414 aa24.25■■□□□ 1.47
CLN3-259ENST00000637551 DLG5Q8TDM6 1919 aa24.24■■□□□ 1.47
CLN3-259ENST00000637551 SLC15A2Q16348 729 aa24.24■■□□□ 1.47
CLN3-259ENST00000637551 LRRC4BQ9NT99 713 aa24.24■■□□□ 1.47
CLN3-259ENST00000637551 UBR2Q8IWV8 1755 aa24.24■■□□□ 1.47
CLN3-259ENST00000637551 WDR43Q15061 677 aaKnown RBP eCLIP24.23■■□□□ 1.47
CLN3-259ENST00000637551 MAPK8IP3Q9UPT6 1336 aa24.23■■□□□ 1.47
CLN3-259ENST00000637551 LOC102724428A0A0B4J2F2 783 aa24.22■■□□□ 1.47
CLN3-259ENST00000637551 ZBTB7AO95365 584 aa24.22■■□□□ 1.47
CLN3-259ENST00000637551 SIK1P57059 783 aa24.22■■□□□ 1.47
CLN3-259ENST00000637551 ATG3Q9NT62 314 aa24.22■■□□□ 1.47
CLN3-259ENST00000637551 CHD4Q14839 1912 aa24.22■■□□□ 1.47
CLN3-259ENST00000637551 NFATC2IPQ8NCF5 419 aa24.21■■□□□ 1.47
CLN3-259ENST00000637551 C4BP0C0L5 1744 aa24.21■■□□□ 1.47
CLN3-259ENST00000637551 COL5A3P25940 1745 aaPredicted RBP24.21■■□□□ 1.47
CLN3-259ENST00000637551 RTF1Q92541 710 aaKnown RBP24.2■■□□□ 1.46
CLN3-259ENST00000637551 AKT1S1Q96B36 256 aa24.2■■□□□ 1.46
CLN3-259ENST00000637551 ASAP1Q9ULH1 1129 aa24.2■■□□□ 1.46
CLN3-259ENST00000637551 SYT17Q9BSW7 474 aa24.19■■□□□ 1.46
CLN3-259ENST00000637551 LGR6Q9HBX8 967 aa24.19■■□□□ 1.46
CLN3-259ENST00000637551 TEFQ10587 303 aa24.18■■□□□ 1.46
CLN3-259ENST00000637551 NFE2L2Q16236 605 aa24.18■■□□□ 1.46
CLN3-259ENST00000637551 IL17REQ8NFR9 667 aa24.18■■□□□ 1.46
CLN3-259ENST00000637551 FHDC1Q9C0D6 1143 aaPredicted RBP24.18■■□□□ 1.46
CLN3-259ENST00000637551 TUBGCP6Q96RT7 1819 aa24.17■■□□□ 1.46
CLN3-259ENST00000637551 ATF5Q9Y2D1 282 aaPredicted RBP24.17■■□□□ 1.46
CLN3-259ENST00000637551 LMOD3Q0VAK6 560 aa24.16■■□□□ 1.46
CLN3-259ENST00000637551 VSIG10Q8N0Z9 540 aa24.16■■□□□ 1.46
CLN3-259ENST00000637551 FLAD1Q8NFF5 587 aa24.16■■□□□ 1.46
CLN3-259ENST00000637551 KCPQ6ZWJ8 1503 aa24.15■■□□□ 1.46
CLN3-259ENST00000637551 UBR3Q6ZT12 1888 aa24.15■■□□□ 1.46
CLN3-259ENST00000637551 RUNDC1Q96C34 613 aa24.15■■□□□ 1.46
CLN3-259ENST00000637551 COL24A1Q17RW2 1714 aa24.14■■□□□ 1.45
CLN3-259ENST00000637551 SLC16A10Q8TF71 515 aa24.14■■□□□ 1.45
CLN3-259ENST00000637551 TJP1Q07157 1748 aa24.13■■□□□ 1.45
CLN3-259ENST00000637551 RC3H1Q5TC82 1133 aaKnown RBP24.13■■□□□ 1.45
CLN3-259ENST00000637551 CNTNAP4Q9C0A0 1308 aa24.12■■□□□ 1.45
CLN3-259ENST00000637551 ATP6V1AP38606 617 aa24.12■■□□□ 1.45
CLN3-259ENST00000637551 ZNF827Q17R98 1081 aa24.12■■□□□ 1.45
CLN3-259ENST00000637551 ADAMTS8Q9UP79 889 aa24.12■■□□□ 1.45
CLN3-259ENST00000637551 SGIP1Q9BQI5 828 aa24.11■■□□□ 1.45
CLN3-259ENST00000637551 NCBP3Q53F19 620 aaKnown RBP24.1■■□□□ 1.45
CLN3-259ENST00000637551 TTC5Q8N0Z6 440 aa24.1■■□□□ 1.45
CLN3-259ENST00000637551 PNISRQ8TF01 805 aaKnown RBP24.1■■□□□ 1.45
CLN3-259ENST00000637551 TFCP2L1Q9NZI6 479 aa24.1■■□□□ 1.45
CLN3-259ENST00000637551 SSFA2P28290 1259 aa24.09■■□□□ 1.45
CLN3-259ENST00000637551 ZNF790Q6PG37 636 aa24.09■■□□□ 1.45
CLN3-259ENST00000637551 MTFR1LQ9H019 292 aa24.09■■□□□ 1.45
CLN3-259ENST00000637551 BABAM1Q9NWV8 329 aa24.09■■□□□ 1.45
CLN3-259ENST00000637551 KDM3BQ7LBC6 1761 aa24.08■■□□□ 1.45
CLN3-259ENST00000637551 CEP350Q5VT06 3117 aa24.08■■□□□ 1.45
CLN3-259ENST00000637551 ADRA2BP18089 450 aa24.08■■□□□ 1.45
CLN3-259ENST00000637551 TMPOP42166 694 aaKnown RBP24.08■■□□□ 1.45
CLN3-259ENST00000637551 PNPLA7Q6ZV29 1317 aa24.08■■□□□ 1.44
CLN3-259ENST00000637551 ITPK1Q13572 414 aa24.07■■□□□ 1.44
CLN3-259ENST00000637551 AK7Q96M32 723 aa24.07■■□□□ 1.44
CLN3-259ENST00000637551 SLC4A9Q96Q91 983 aa24.07■■□□□ 1.44
CLN3-259ENST00000637551 RBM42Q9BTD8 480 aaKnown RBP24.07■■□□□ 1.44
CLN3-259ENST00000637551 TEX13AQ9BXU3 409 aaPredicted RBP24.07■■□□□ 1.44
CLN3-259ENST00000637551 MYH14Q7Z406 1995 aaKnown RBP24.06■■□□□ 1.44
CLN3-259ENST00000637551 TAF7Q15545 349 aaPredicted RBP24.06■■□□□ 1.44
CLN3-259ENST00000637551 LINC00116Q8NCU8 138 aa24.06■■□□□ 1.44
CLN3-259ENST00000637551 MRS2Q9HD23 443 aa24.06■■□□□ 1.44
CLN3-259ENST00000637551 BTBD11A6QL63 1104 aa24.05■■□□□ 1.44
CLN3-259ENST00000637551 MCM10Q7L590 875 aa24.05■■□□□ 1.44
CLN3-259ENST00000637551 HEG1Q9ULI3 1381 aa24.04■■□□□ 1.44
CLN3-259ENST00000637551 PTCD1O75127 700 aaKnown RBP24.04■■□□□ 1.44
CLN3-259ENST00000637551 KCNQ4P56696 695 aa24.04■■□□□ 1.44
CLN3-259ENST00000637551 RIPK4P57078 832 aa24.04■■□□□ 1.44
CLN3-259ENST00000637551 FMNL2Q96PY5 1086 aa24.04■■□□□ 1.44
CLN3-259ENST00000637551 ARXQ96QS3 562 aa24.02■■□□□ 1.44
CLN3-259ENST00000637551 GIGYF1O75420 1035 aaPredicted RBP24.01■■□□□ 1.43
CLN3-259ENST00000637551 SLC39A6Q13433 755 aa24.01■■□□□ 1.43
CLN3-259ENST00000637551 RPS6KA4O75676 772 aa24■■□□□ 1.43
CLN3-259ENST00000637551 NGEFQ8N5V2 710 aa24■■□□□ 1.43
CLN3-259ENST00000637551 RTCBQ9Y3I0 505 aaKnown RBP24■■□□□ 1.43
CLN3-259ENST00000637551 LAMB4A4D0S4 1761 aa24■■□□□ 1.43
CLN3-259ENST00000637551 GNPATO15228 680 aa23.99■■□□□ 1.43
CLN3-259ENST00000637551 STARD3NLO95772 234 aa23.99■■□□□ 1.43
CLN3-259ENST00000637551 CALD1Q05682 793 aaKnown RBP23.99■■□□□ 1.43
CLN3-259ENST00000637551 ZNF496Q96IT1 587 aaPredicted RBP23.99■■□□□ 1.43
CLN3-259ENST00000637551 CRKLP46109 303 aaKnown RBP23.98■■□□□ 1.43
CLN3-259ENST00000637551 DCTN1Q14203 1278 aa23.98■■□□□ 1.43
CLN3-259ENST00000637551 CCDC184Q52MB2 194 aa23.98■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms