RNA–Protein interactions for RNA: ENST00000635675.2

LINC00339-210, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,404 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-210ENST00000635675 HTATSF1O43719 755 aaKnown RBP12.9□□□□□ -0.34
LINC00339-210ENST00000635675 ANO8Q9HCE9 1232 aaPredicted RBP12.9□□□□□ -0.34
LINC00339-210ENST00000635675 CCNL1Q9UK58 526 aaPredicted RBP12.9□□□□□ -0.34
LINC00339-210ENST00000635675 CEMIPQ8WUJ3 1361 aa12.9□□□□□ -0.34
LINC00339-210ENST00000635675 R3HDM1Q15032 1099 aaKnown RBP12.89□□□□□ -0.35
LINC00339-210ENST00000635675 NFE2L2Q16236 605 aa12.89□□□□□ -0.35
LINC00339-210ENST00000635675 MAPK8IP3Q9UPT6 1336 aa12.89□□□□□ -0.35
LINC00339-210ENST00000635675 LOC102724428A0A0B4J2F2 783 aa12.88□□□□□ -0.35
LINC00339-210ENST00000635675 PSDA5PKW4 1024 aaPredicted RBP12.88□□□□□ -0.35
LINC00339-210ENST00000635675 SIK1P57059 783 aa12.88□□□□□ -0.35
LINC00339-210ENST00000635675 PNISRQ8TF01 805 aaKnown RBP12.88□□□□□ -0.35
LINC00339-210ENST00000635675 RUNDC1Q96C34 613 aa12.88□□□□□ -0.35
LINC00339-210ENST00000635675 MRS2Q9HD23 443 aa12.88□□□□□ -0.35
LINC00339-210ENST00000635675 PAPPAQ13219 1627 aa12.88□□□□□ -0.35
LINC00339-210ENST00000635675 DLG5Q8TDM6 1919 aa12.88□□□□□ -0.35
LINC00339-210ENST00000635675 TEFQ10587 303 aa12.88□□□□□ -0.35
LINC00339-210ENST00000635675 SLC15A2Q16348 729 aa12.88□□□□□ -0.35
LINC00339-210ENST00000635675 MCM10Q7L590 875 aa12.88□□□□□ -0.35
LINC00339-210ENST00000635675 CCDC146Q8IYE0 955 aa12.88□□□□□ -0.35
LINC00339-210ENST00000635675 RTF1Q92541 710 aaKnown RBP12.88□□□□□ -0.35
LINC00339-210ENST00000635675 AKT1S1Q96B36 256 aa12.88□□□□□ -0.35
LINC00339-210ENST00000635675 SLC4A9Q96Q91 983 aa12.88□□□□□ -0.35
LINC00339-210ENST00000635675 TMPOP42166 694 aaKnown RBP12.87□□□□□ -0.35
LINC00339-210ENST00000635675 DCTN1Q14203 1278 aa12.87□□□□□ -0.35
LINC00339-210ENST00000635675 STK32BQ9NY57 414 aa12.87□□□□□ -0.35
LINC00339-210ENST00000635675 SIPA1L3O60292 1781 aaPredicted RBP12.86□□□□□ -0.35
LINC00339-210ENST00000635675 TAF1LQ8IZX4 1826 aa12.86□□□□□ -0.35
LINC00339-210ENST00000635675 HMGB2P26583 209 aaKnown RBP12.86□□□□□ -0.35
LINC00339-210ENST00000635675 ATP6V1AP38606 617 aa12.86□□□□□ -0.35
LINC00339-210ENST00000635675 SLC39A6Q13433 755 aa12.86□□□□□ -0.35
LINC00339-210ENST00000635675 ITPK1Q13572 414 aa12.86□□□□□ -0.35
LINC00339-210ENST00000635675 ZNF827Q17R98 1081 aa12.86□□□□□ -0.35
LINC00339-210ENST00000635675 ZNF831Q5JPB2 1677 aa12.85□□□□□ -0.35
LINC00339-210ENST00000635675 PTCD1O75127 700 aaKnown RBP12.85□□□□□ -0.35
LINC00339-210ENST00000635675 RIPK4P57078 832 aa12.85□□□□□ -0.35
LINC00339-210ENST00000635675 RBM42Q9BTD8 480 aaKnown RBP12.85□□□□□ -0.35
LINC00339-210ENST00000635675 C5P01031 1676 aa12.84□□□□□ -0.35
LINC00339-210ENST00000635675 PIAS4Q8N2W9 510 aaPredicted RBP12.84□□□□□ -0.35
LINC00339-210ENST00000635675 RRP7AQ9Y3A4 280 aaKnown RBP12.84□□□□□ -0.35
LINC00339-210ENST00000635675 TAF7Q15545 349 aaPredicted RBP12.83□□□□□ -0.36
LINC00339-210ENST00000635675 ZNF790Q6PG37 636 aa12.83□□□□□ -0.36
LINC00339-210ENST00000635675 LINC00116Q8NCU8 138 aa12.83□□□□□ -0.36
LINC00339-210ENST00000635675 THUMPD2Q9BTF0 503 aaKnown RBP12.83□□□□□ -0.36
LINC00339-210ENST00000635675 KCPQ6ZWJ8 1503 aa12.83□□□□□ -0.36
LINC00339-210ENST00000635675 BTBD11A6QL63 1104 aa12.82□□□□□ -0.36
LINC00339-210ENST00000635675 NEUROD2Q15784 382 aa12.82□□□□□ -0.36
LINC00339-210ENST00000635675 DIEXFQ68CQ4 756 aaKnown RBP12.82□□□□□ -0.36
LINC00339-210ENST00000635675 PDGFDQ9GZP0 370 aaPredicted RBP12.82□□□□□ -0.36
LINC00339-210ENST00000635675 TRIM35Q9UPQ4 493 aa12.82□□□□□ -0.36
LINC00339-210ENST00000635675 C4BP0C0L5 1744 aa12.82□□□□□ -0.36
LINC00339-210ENST00000635675 UBR2Q8IWV8 1755 aa12.82□□□□□ -0.36
LINC00339-210ENST00000635675 APAF1O14727 1248 aa12.81□□□□□ -0.36
LINC00339-210ENST00000635675 KCNQ3O43525 872 aa12.81□□□□□ -0.36
LINC00339-210ENST00000635675 LMOD3Q0VAK6 560 aa12.81□□□□□ -0.36
LINC00339-210ENST00000635675 TTC5Q8N0Z6 440 aa12.81□□□□□ -0.36
LINC00339-210ENST00000635675 VSIG10Q8N0Z9 540 aa12.81□□□□□ -0.36
LINC00339-210ENST00000635675 ZNF496Q96IT1 587 aaPredicted RBP12.81□□□□□ -0.36
LINC00339-210ENST00000635675 TFCP2L1Q9NZI6 479 aa12.81□□□□□ -0.36
LINC00339-210ENST00000635675 CICQ96RK0 1608 aaPredicted RBP12.8□□□□□ -0.36
LINC00339-210ENST00000635675 RC3H1Q5TC82 1133 aaKnown RBP12.8□□□□□ -0.36
LINC00339-210ENST00000635675 QSER1Q2KHR3 1735 aa12.8□□□□□ -0.36
LINC00339-210ENST00000635675 PNPLA7Q6ZV29 1317 aa12.8□□□□□ -0.36
LINC00339-210ENST00000635675 CASZ1Q86V15 1759 aa12.8□□□□□ -0.36
LINC00339-210ENST00000635675 COL5A3P25940 1745 aaPredicted RBP12.8□□□□□ -0.36
LINC00339-210ENST00000635675 TJP1Q07157 1748 aa12.8□□□□□ -0.36
LINC00339-210ENST00000635675 TUBGCP6Q96RT7 1819 aa12.8□□□□□ -0.36
LINC00339-210ENST00000635675 DNAJC10Q8IXB1 793 aa12.79□□□□□ -0.36
LINC00339-210ENST00000635675 MIS18AQ9NYP9 233 aa12.79□□□□□ -0.36
LINC00339-210ENST00000635675 CCER2I3L3R5 266 aa12.79□□□□□ -0.36
LINC00339-210ENST00000635675 AMIGO3Q86WK7 504 aa12.79□□□□□ -0.36
LINC00339-210ENST00000635675 COL23A1Q86Y22 540 aaPredicted RBP12.79□□□□□ -0.36
LINC00339-210ENST00000635675 AK7Q96M32 723 aa12.79□□□□□ -0.36
LINC00339-210ENST00000635675 FMNL2Q96PY5 1086 aa12.79□□□□□ -0.36
LINC00339-210ENST00000635675 CNTNAP4Q9C0A0 1308 aa12.79□□□□□ -0.36
LINC00339-210ENST00000635675 HEG1Q9ULI3 1381 aa12.79□□□□□ -0.36
LINC00339-210ENST00000635675 MYH14Q7Z406 1995 aaKnown RBP12.78□□□□□ -0.36
LINC00339-210ENST00000635675 GNPATO15228 680 aa12.78□□□□□ -0.36
LINC00339-210ENST00000635675 CYP19A1P11511 503 aaPredicted RBP12.78□□□□□ -0.36
LINC00339-210ENST00000635675 CRKLP46109 303 aaKnown RBP12.78□□□□□ -0.36
LINC00339-210ENST00000635675 UBR3Q6ZT12 1888 aa12.78□□□□□ -0.36
LINC00339-210ENST00000635675 FAM9BQ8IZU0 186 aa12.78□□□□□ -0.36
LINC00339-210ENST00000635675 FLAD1Q8NFF5 587 aa12.78□□□□□ -0.36
LINC00339-210ENST00000635675 INTS5Q6P9B9 1019 aaKnown RBP12.77□□□□□ -0.37
LINC00339-210ENST00000635675 SMIM5Q71RC9 77 aa12.77□□□□□ -0.37
LINC00339-210ENST00000635675 TEX13AQ9BXU3 409 aaPredicted RBP12.77□□□□□ -0.37
LINC00339-210ENST00000635675 BABAM1Q9NWV8 329 aa12.77□□□□□ -0.37
LINC00339-210ENST00000635675 KDM3BQ7LBC6 1761 aa12.76□□□□□ -0.37
LINC00339-210ENST00000635675 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.76□□□□□ -0.37
LINC00339-210ENST00000635675 RPS6KA4O75676 772 aa12.76□□□□□ -0.37
LINC00339-210ENST00000635675 ZBTB7AO95365 584 aa12.76□□□□□ -0.37
LINC00339-210ENST00000635675 SSFA2P28290 1259 aa12.76□□□□□ -0.37
LINC00339-210ENST00000635675 NCBP3Q53F19 620 aaKnown RBP12.76□□□□□ -0.37
LINC00339-210ENST00000635675 MIER1Q8N108 512 aa12.76□□□□□ -0.37
LINC00339-210ENST00000635675 SLC16A10Q8TF71 515 aa12.76□□□□□ -0.37
LINC00339-210ENST00000635675 CHL1O00533 1208 aa12.75□□□□□ -0.37
LINC00339-210ENST00000635675 STARD3NLO95772 234 aa12.75□□□□□ -0.37
LINC00339-210ENST00000635675 SNRPA1P09661 255 aaKnown RBP12.75□□□□□ -0.37
LINC00339-210ENST00000635675 EIF4A1P60842 406 aaKnown RBP12.75□□□□□ -0.37
LINC00339-210ENST00000635675 CCDC27Q2M243 656 aa12.75□□□□□ -0.37
LINC00339-210ENST00000635675 MTFR1LQ9H019 292 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms