RNA–Protein interactions for RNA: ENST00000634934.2

LINC00339-208, long intergenic non-protein coding RNA 339, humanhuman

TSL 5 BASIC

Gene LINC00339, Length 1,518 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-208ENST00000634934 ERVV-2B6SEH9 535 aa18.82■□□□□ 0.6
LINC00339-208ENST00000634934 KCNQ2O43526 872 aa18.82■□□□□ 0.6
LINC00339-208ENST00000634934 GOLGA2Q08379 1002 aa18.82■□□□□ 0.6
LINC00339-208ENST00000634934 CCDC125Q86Z20 511 aa18.82■□□□□ 0.6
LINC00339-208ENST00000634934 SYTL4Q96C24 671 aaPredicted RBP18.82■□□□□ 0.6
LINC00339-208ENST00000634934 KAT6BQ8WYB5 2073 aa18.81■□□□□ 0.6
LINC00339-208ENST00000634934 SF3B2Q13435 895 aaKnown RBP18.81■□□□□ 0.6
LINC00339-208ENST00000634934 NFATC2IPQ8NCF5 419 aa18.81■□□□□ 0.6
LINC00339-208ENST00000634934 SLC52A2Q9HAB3 445 aa18.81■□□□□ 0.6
LINC00339-208ENST00000634934 TOGARAM1Q9Y4F4 1720 aa18.81■□□□□ 0.6
LINC00339-208ENST00000634934 PRIM1P49642 420 aaKnown RBP18.8■□□□□ 0.6
LINC00339-208ENST00000634934 TAF7Q15545 349 aaPredicted RBP18.8■□□□□ 0.6
LINC00339-208ENST00000634934 CDCA7LQ96GN5 454 aa18.79■□□□□ 0.6
LINC00339-208ENST00000634934 TMOD3Q9NYL9 352 aa18.79■□□□□ 0.6
LINC00339-208ENST00000634934 MIS18AQ9NYP9 233 aa18.79■□□□□ 0.6
LINC00339-208ENST00000634934 IL16Q14005 1332 aa18.79■□□□□ 0.6
LINC00339-208ENST00000634934 APBA3O96018 575 aa18.79■□□□□ 0.6
LINC00339-208ENST00000634934 GNAI1P63096 354 aa18.79■□□□□ 0.6
LINC00339-208ENST00000634934 EN1Q05925 392 aaPredicted RBP18.79■□□□□ 0.6
LINC00339-208ENST00000634934 SPINK5Q9NQ38 1064 aaPredicted RBP18.79■□□□□ 0.6
LINC00339-208ENST00000634934 IFT57Q9NWB7 429 aa18.79■□□□□ 0.6
LINC00339-208ENST00000634934 SCN11AQ9UI33 1791 aa18.79■□□□□ 0.6
LINC00339-208ENST00000634934 BTAF1O14981 1849 aa18.78■□□□□ 0.6
LINC00339-208ENST00000634934 ADAMTS7Q9UKP4 1686 aa18.78■□□□□ 0.6
LINC00339-208ENST00000634934 BTBD11A6QL63 1104 aa18.78■□□□□ 0.6
LINC00339-208ENST00000634934 CFAP44Q96MT7 982 aa18.78■□□□□ 0.6
LINC00339-208ENST00000634934 BCL11BQ9C0K0 894 aaPredicted RBP18.78■□□□□ 0.6
LINC00339-208ENST00000634934 E9PSI1 815 aa18.77■□□□□ 0.6
LINC00339-208ENST00000634934 TSPYL4Q9UJ04 414 aa18.77■□□□□ 0.6
LINC00339-208ENST00000634934 BAG6P46379 1132 aa18.76■□□□□ 0.59
LINC00339-208ENST00000634934 SLFN5Q08AF3 891 aa18.76■□□□□ 0.59
LINC00339-208ENST00000634934 PIGBQ92521 554 aa18.76■□□□□ 0.59
LINC00339-208ENST00000634934 MYH16Q9H6N6 1097 aa18.76■□□□□ 0.59
LINC00339-208ENST00000634934 ITGB4P16144 1822 aa18.76■□□□□ 0.59
LINC00339-208ENST00000634934 MRC1P22897 1456 aa18.75■□□□□ 0.59
LINC00339-208ENST00000634934 CHL1O00533 1208 aa18.75■□□□□ 0.59
LINC00339-208ENST00000634934 ZNF853P0CG23 659 aa18.75■□□□□ 0.59
LINC00339-208ENST00000634934 TSR2Q969E8 191 aaKnown RBP18.75■□□□□ 0.59
LINC00339-208ENST00000634934 EZH2Q15910 746 aaKnown RBP18.74■□□□□ 0.59
LINC00339-208ENST00000634934 MBIPQ9NS73 344 aa18.74■□□□□ 0.59
LINC00339-208ENST00000634934 VIRMAQ69YN4 1812 aaKnown RBP18.74■□□□□ 0.59
LINC00339-208ENST00000634934 SLC39A6Q13433 755 aa18.74■□□□□ 0.59
LINC00339-208ENST00000634934 FANCIQ9NVI1 1328 aa18.73■□□□□ 0.59
LINC00339-208ENST00000634934 CAMKK2Q96RR4 588 aa18.73■□□□□ 0.59
LINC00339-208ENST00000634934 BABAM1Q9NWV8 329 aa18.73■□□□□ 0.59
LINC00339-208ENST00000634934 RREB1Q92766 1687 aa18.72■□□□□ 0.59
LINC00339-208ENST00000634934 KCNQ3O43525 872 aa18.72■□□□□ 0.59
LINC00339-208ENST00000634934 TTC5Q8N0Z6 440 aa18.72■□□□□ 0.59
LINC00339-208ENST00000634934 RGPD3A6NKT7 1758 aaPredicted RBP18.72■□□□□ 0.59
LINC00339-208ENST00000634934 RGPD4Q7Z3J3 1758 aa18.72■□□□□ 0.59
LINC00339-208ENST00000634934 ERICH6BQ5W0A0 696 aa18.71■□□□□ 0.59
LINC00339-208ENST00000634934 ZNF790Q6PG37 636 aa18.71■□□□□ 0.59
LINC00339-208ENST00000634934 ASAP1Q9ULH1 1129 aa18.71■□□□□ 0.59
LINC00339-208ENST00000634934 NUP188Q5SRE5 1749 aa18.7■□□□□ 0.58
LINC00339-208ENST00000634934 SIPA1L3O60292 1781 aaPredicted RBP18.7■□□□□ 0.58
LINC00339-208ENST00000634934 DUSP27Q5VZP5 1158 aa18.69■□□□□ 0.58
LINC00339-208ENST00000634934 TRMT2AQ8IZ69 625 aaKnown RBP18.69■□□□□ 0.58
LINC00339-208ENST00000634934 ATG3Q9NT62 314 aa18.69■□□□□ 0.58
LINC00339-208ENST00000634934 PTCD1O75127 700 aaKnown RBP18.68■□□□□ 0.58
LINC00339-208ENST00000634934 NEFLP07196 543 aa18.68■□□□□ 0.58
LINC00339-208ENST00000634934 EXOSC9Q06265 439 aaKnown RBP18.68■□□□□ 0.58
LINC00339-208ENST00000634934 PLSCR1O15162 318 aa18.67■□□□□ 0.58
LINC00339-208ENST00000634934 EIF4A1P60842 406 aaKnown RBP18.67■□□□□ 0.58
LINC00339-208ENST00000634934 PROM2Q8N271 834 aa18.67■□□□□ 0.58
LINC00339-208ENST00000634934 ELL2O00472 640 aaPredicted RBP18.66■□□□□ 0.58
LINC00339-208ENST00000634934 KRT24Q2M2I5 525 aa18.66■□□□□ 0.58
LINC00339-208ENST00000634934 SMARCC1Q92922 1105 aaPredicted RBP18.66■□□□□ 0.58
LINC00339-208ENST00000634934 ZNF496Q96IT1 587 aaPredicted RBP18.66■□□□□ 0.58
LINC00339-208ENST00000634934 FMNL2Q96PY5 1086 aa18.66■□□□□ 0.58
LINC00339-208ENST00000634934 RBM42Q9BTD8 480 aaKnown RBP18.66■□□□□ 0.58
LINC00339-208ENST00000634934 LY75O60449 1722 aa18.66■□□□□ 0.58
LINC00339-208ENST00000634934 PALLDQ8WX93 1383 aa18.65■□□□□ 0.58
LINC00339-208ENST00000634934 C8orf58Q8NAV2 365 aa18.64■□□□□ 0.58
LINC00339-208ENST00000634934 KDM3BQ7LBC6 1761 aa18.64■□□□□ 0.57
LINC00339-208ENST00000634934 KCNQ4P56696 695 aa18.64■□□□□ 0.57
LINC00339-208ENST00000634934 TXNRD1Q16881 649 aa18.64■□□□□ 0.57
LINC00339-208ENST00000634934 TSHZ2Q9NRE2 1034 aa18.64■□□□□ 0.57
LINC00339-208ENST00000634934 TSPYL6Q8N831 410 aa18.63■□□□□ 0.57
LINC00339-208ENST00000634934 TWISTNBQ3B726 338 aaPredicted RBP18.62■□□□□ 0.57
LINC00339-208ENST00000634934 PAPPAQ13219 1627 aa18.62■□□□□ 0.57
LINC00339-208ENST00000634934 SNRPA1P09661 255 aaKnown RBP18.61■□□□□ 0.57
LINC00339-208ENST00000634934 KCPQ6ZWJ8 1503 aa18.61■□□□□ 0.57
LINC00339-208ENST00000634934 HEG1Q9ULI3 1381 aa18.61■□□□□ 0.57
LINC00339-208ENST00000634934 LOC102724428A0A0B4J2F2 783 aa18.6■□□□□ 0.57
LINC00339-208ENST00000634934 PRAMEF22A3QJZ6 481 aa18.6■□□□□ 0.57
LINC00339-208ENST00000634934 GIGYF1O75420 1035 aaPredicted RBP18.6■□□□□ 0.57
LINC00339-208ENST00000634934 SIK1P57059 783 aa18.6■□□□□ 0.57
LINC00339-208ENST00000634934 LRRC4BQ9NT99 713 aa18.6■□□□□ 0.57
LINC00339-208ENST00000634934 FKBP8Q14318 412 aa18.59■□□□□ 0.57
LINC00339-208ENST00000634934 EIF2S2P20042 333 aaKnown RBP18.59■□□□□ 0.57
LINC00339-208ENST00000634934 ATP6V1AP38606 617 aa18.59■□□□□ 0.57
LINC00339-208ENST00000634934 VSIG10Q8N0Z9 540 aa18.59■□□□□ 0.57
LINC00339-208ENST00000634934 SLC4A9Q96Q91 983 aa18.59■□□□□ 0.57
LINC00339-208ENST00000634934 PSDA5PKW4 1024 aaPredicted RBP18.58■□□□□ 0.56
LINC00339-208ENST00000634934 VAMP4O75379 141 aa18.58■□□□□ 0.56
LINC00339-208ENST00000634934 NECTIN2Q92692 538 aa18.58■□□□□ 0.56
LINC00339-208ENST00000634934 ANO8Q9HCE9 1232 aaPredicted RBP18.58■□□□□ 0.56
LINC00339-208ENST00000634934 CCNL1Q9UK58 526 aaPredicted RBP18.58■□□□□ 0.56
LINC00339-208ENST00000634934 UBR2Q8IWV8 1755 aa18.58■□□□□ 0.56
LINC00339-208ENST00000634934 HOXB7P09629 217 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms