RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 NFATC2IPQ8NCF5 419 aa26.86■■□□□ 1.89
PTCD3-220ENST00000627371 IL17REQ8NFR9 667 aa26.86■■□□□ 1.89
PTCD3-220ENST00000627371 PNISRQ8TF01 805 aaKnown RBP26.86■■□□□ 1.89
PTCD3-220ENST00000627371 RUNDC1Q96C34 613 aa26.86■■□□□ 1.89
PTCD3-220ENST00000627371 HTATSF1O43719 755 aaKnown RBP26.85■■□□□ 1.89
PTCD3-220ENST00000627371 SLC27A3Q5K4L6 730 aa26.84■■□□□ 1.89
PTCD3-220ENST00000627371 RTF1Q92541 710 aaKnown RBP26.84■■□□□ 1.89
PTCD3-220ENST00000627371 ASAP1Q9ULH1 1129 aa26.84■■□□□ 1.89
PTCD3-220ENST00000627371 C5P01031 1676 aa26.84■■□□□ 1.89
PTCD3-220ENST00000627371 ZNF831Q5JPB2 1677 aa26.84■■□□□ 1.89
PTCD3-220ENST00000627371 ATG3Q9NT62 314 aa26.83■■□□□ 1.89
PTCD3-220ENST00000627371 UBR2Q8IWV8 1755 aa26.81■■□□□ 1.88
PTCD3-220ENST00000627371 LRRC4BQ9NT99 713 aa26.81■■□□□ 1.88
PTCD3-220ENST00000627371 TMPOP42166 694 aaKnown RBP26.8■■□□□ 1.88
PTCD3-220ENST00000627371 TEFQ10587 303 aa26.8■■□□□ 1.88
PTCD3-220ENST00000627371 MCM10Q7L590 875 aa26.8■■□□□ 1.88
PTCD3-220ENST00000627371 CCNL1Q9UK58 526 aaPredicted RBP26.8■■□□□ 1.88
PTCD3-220ENST00000627371 DCTN1Q14203 1278 aa26.78■■□□□ 1.88
PTCD3-220ENST00000627371 CICQ96RK0 1608 aaPredicted RBP26.78■■□□□ 1.88
PTCD3-220ENST00000627371 RIPK4P57078 832 aa26.77■■□□□ 1.88
PTCD3-220ENST00000627371 NBPF14Q5TI25 921 aa26.77■■□□□ 1.88
PTCD3-220ENST00000627371 LOC102724428A0A0B4J2F2 783 aa26.76■■□□□ 1.87
PTCD3-220ENST00000627371 SIK1P57059 783 aa26.76■■□□□ 1.87
PTCD3-220ENST00000627371 COL5A3P25940 1745 aaPredicted RBP26.76■■□□□ 1.87
PTCD3-220ENST00000627371 KCPQ6ZWJ8 1503 aa26.75■■□□□ 1.87
PTCD3-220ENST00000627371 CCER2I3L3R5 266 aa26.75■■□□□ 1.87
PTCD3-220ENST00000627371 KCNQ4P56696 695 aa26.75■■□□□ 1.87
PTCD3-220ENST00000627371 LMOD3Q0VAK6 560 aa26.75■■□□□ 1.87
PTCD3-220ENST00000627371 ANO8Q9HCE9 1232 aaPredicted RBP26.75■■□□□ 1.87
PTCD3-220ENST00000627371 RRP7AQ9Y3A4 280 aaKnown RBP26.75■■□□□ 1.87
PTCD3-220ENST00000627371 QSER1Q2KHR3 1735 aa26.75■■□□□ 1.87
PTCD3-220ENST00000627371 TUBGCP6Q96RT7 1819 aa26.74■■□□□ 1.87
PTCD3-220ENST00000627371 TJP1Q07157 1748 aa26.74■■□□□ 1.87
PTCD3-220ENST00000627371 C4BP0C0L5 1744 aa26.73■■□□□ 1.87
PTCD3-220ENST00000627371 KDM3BQ7LBC6 1761 aa26.73■■□□□ 1.87
PTCD3-220ENST00000627371 APAF1O14727 1248 aa26.72■■□□□ 1.87
PTCD3-220ENST00000627371 HMGB2P26583 209 aaKnown RBP26.72■■□□□ 1.87
PTCD3-220ENST00000627371 SLC39A6Q13433 755 aa26.72■■□□□ 1.87
PTCD3-220ENST00000627371 NEUROD2Q15784 382 aa26.72■■□□□ 1.87
PTCD3-220ENST00000627371 RBM42Q9BTD8 480 aaKnown RBP26.71■■□□□ 1.87
PTCD3-220ENST00000627371 ATP6V1AP38606 617 aa26.7■■□□□ 1.86
PTCD3-220ENST00000627371 FAM9BQ8IZU0 186 aa26.7■■□□□ 1.86
PTCD3-220ENST00000627371 SLC4A9Q96Q91 983 aa26.7■■□□□ 1.86
PTCD3-220ENST00000627371 THUMPD2Q9BTF0 503 aaKnown RBP26.7■■□□□ 1.86
PTCD3-220ENST00000627371 STK32BQ9NY57 414 aa26.7■■□□□ 1.86
PTCD3-220ENST00000627371 BTBD11A6QL63 1104 aa26.69■■□□□ 1.86
PTCD3-220ENST00000627371 PTCD1O75127 700 aaKnown RBP26.69■■□□□ 1.86
PTCD3-220ENST00000627371 R3HDM1Q15032 1099 aaKnown RBP26.69■■□□□ 1.86
PTCD3-220ENST00000627371 SLC15A2Q16348 729 aa26.69■■□□□ 1.86
PTCD3-220ENST00000627371 ZNF790Q6PG37 636 aa26.69■■□□□ 1.86
PTCD3-220ENST00000627371 TTC5Q8N0Z6 440 aa26.69■■□□□ 1.86
PTCD3-220ENST00000627371 TRIM35Q9UPQ4 493 aa26.69■■□□□ 1.86
PTCD3-220ENST00000627371 ITPK1Q13572 414 aa26.68■■□□□ 1.86
PTCD3-220ENST00000627371 ZNF827Q17R98 1081 aa26.68■■□□□ 1.86
PTCD3-220ENST00000627371 AKT1S1Q96B36 256 aa26.68■■□□□ 1.86
PTCD3-220ENST00000627371 UBR3Q6ZT12 1888 aa26.68■■□□□ 1.86
PTCD3-220ENST00000627371 PSDA5PKW4 1024 aaPredicted RBP26.67■■□□□ 1.86
PTCD3-220ENST00000627371 TAF7Q15545 349 aaPredicted RBP26.67■■□□□ 1.86
PTCD3-220ENST00000627371 MIER1Q8N108 512 aa26.67■■□□□ 1.86
PTCD3-220ENST00000627371 CASZ1Q86V15 1759 aa26.66■■□□□ 1.86
PTCD3-220ENST00000627371 LINC00116Q8NCU8 138 aa26.65■■□□□ 1.86
PTCD3-220ENST00000627371 MYH14Q7Z406 1995 aaKnown RBP26.65■■□□□ 1.86
PTCD3-220ENST00000627371 VSIG10Q8N0Z9 540 aa26.63■■□□□ 1.85
PTCD3-220ENST00000627371 ZNF496Q96IT1 587 aaPredicted RBP26.63■■□□□ 1.85
PTCD3-220ENST00000627371 KCNQ3O43525 872 aa26.62■■□□□ 1.85
PTCD3-220ENST00000627371 HEG1Q9ULI3 1381 aa26.61■■□□□ 1.85
PTCD3-220ENST00000627371 FMNL2Q96PY5 1086 aa26.61■■□□□ 1.85
PTCD3-220ENST00000627371 NCBP3Q53F19 620 aaKnown RBP26.6■■□□□ 1.85
PTCD3-220ENST00000627371 MIS18AQ9NYP9 233 aa26.6■■□□□ 1.85
PTCD3-220ENST00000627371 LAMB4A4D0S4 1761 aa26.59■■□□□ 1.85
PTCD3-220ENST00000627371 AK7Q96M32 723 aa26.59■■□□□ 1.85
PTCD3-220ENST00000627371 BABAM1Q9NWV8 329 aa26.59■■□□□ 1.85
PTCD3-220ENST00000627371 TFCP2L1Q9NZI6 479 aa26.59■■□□□ 1.85
PTCD3-220ENST00000627371 CNTNAP4Q9C0A0 1308 aa26.59■■□□□ 1.85
PTCD3-220ENST00000627371 CCDC27Q2M243 656 aa26.58■■□□□ 1.85
PTCD3-220ENST00000627371 DNAJC10Q8IXB1 793 aa26.58■■□□□ 1.85
PTCD3-220ENST00000627371 RC3H1Q5TC82 1133 aaKnown RBP26.57■■□□□ 1.84
PTCD3-220ENST00000627371 PNPLA7Q6ZV29 1317 aa26.57■■□□□ 1.84
PTCD3-220ENST00000627371 TSPYL4Q9UJ04 414 aa26.56■■□□□ 1.84
PTCD3-220ENST00000627371 SENP3-EIF4A1A0A087X0R7 540 aa26.55■■□□□ 1.84
PTCD3-220ENST00000627371 CALD1Q05682 793 aaKnown RBP26.55■■□□□ 1.84
PTCD3-220ENST00000627371 CHL1O00533 1208 aa26.53■■□□□ 1.84
PTCD3-220ENST00000627371 GNPATO15228 680 aa26.53■■□□□ 1.84
PTCD3-220ENST00000627371 CYP19A1P11511 503 aaPredicted RBP26.53■■□□□ 1.84
PTCD3-220ENST00000627371 CRKLP46109 303 aaKnown RBP26.53■■□□□ 1.84
PTCD3-220ENST00000627371 TEX13AQ9BXU3 409 aaPredicted RBP26.53■■□□□ 1.84
PTCD3-220ENST00000627371 PDGFDQ9GZP0 370 aaPredicted RBP26.53■■□□□ 1.84
PTCD3-220ENST00000627371 C4AP0C0L4 1744 aa26.53■■□□□ 1.84
PTCD3-220ENST00000627371 EIF4A1P60842 406 aaKnown RBP26.52■■□□□ 1.84
PTCD3-220ENST00000627371 AMIGO3Q86WK7 504 aa26.52■■□□□ 1.84
PTCD3-220ENST00000627371 WWC1Q8IX03 1113 aa26.52■■□□□ 1.84
PTCD3-220ENST00000627371 SNRPA1P09661 255 aaKnown RBP26.51■■□□□ 1.83
PTCD3-220ENST00000627371 SSFA2P28290 1259 aa26.51■■□□□ 1.83
PTCD3-220ENST00000627371 NGEFQ8N5V2 710 aa26.51■■□□□ 1.83
PTCD3-220ENST00000627371 FLAD1Q8NFF5 587 aa26.51■■□□□ 1.83
PTCD3-220ENST00000627371 CFAP44Q96MT7 982 aa26.51■■□□□ 1.83
PTCD3-220ENST00000627371 STARD3NLO95772 234 aa26.5■■□□□ 1.83
PTCD3-220ENST00000627371 INTS5Q6P9B9 1019 aaKnown RBP26.5■■□□□ 1.83
PTCD3-220ENST00000627371 CCDC87Q9NVE4 849 aa26.5■■□□□ 1.83
PTCD3-220ENST00000627371 IFT57Q9NWB7 429 aa26.5■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms