RNA–Protein interactions for RNA: ENST00000623985.3

LINC00643-206, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 864 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-206ENST00000623985 DLG5Q8TDM6 1919 aa20■□□□□ 0.79
LINC00643-206ENST00000623985 SGIP1Q9BQI5 828 aa20■□□□□ 0.79
LINC00643-206ENST00000623985 LOC102724428A0A0B4J2F2 783 aa19.98■□□□□ 0.79
LINC00643-206ENST00000623985 HMOX1P09601 288 aa19.98■□□□□ 0.79
LINC00643-206ENST00000623985 SIK1P57059 783 aa19.98■□□□□ 0.79
LINC00643-206ENST00000623985 ASAP1Q9ULH1 1129 aa19.98■□□□□ 0.79
LINC00643-206ENST00000623985 AKAP4Q5JQC9 854 aa19.96■□□□□ 0.79
LINC00643-206ENST00000623985 ATG3Q9NT62 314 aa19.96■□□□□ 0.79
LINC00643-206ENST00000623985 MAP3K5Q99683 1374 aa19.95■□□□□ 0.79
LINC00643-206ENST00000623985 CABP4P57796 275 aa19.95■□□□□ 0.78
LINC00643-206ENST00000623985 AK7Q96M32 723 aa19.95■□□□□ 0.78
LINC00643-206ENST00000623985 CFAP53Q96M91 514 aa19.95■□□□□ 0.78
LINC00643-206ENST00000623985 FLAD1Q8NFF5 587 aa19.94■□□□□ 0.78
LINC00643-206ENST00000623985 COL23A1Q86Y22 540 aaPredicted RBP19.93■□□□□ 0.78
LINC00643-206ENST00000623985 LINC00116Q8NCU8 138 aa19.93■□□□□ 0.78
LINC00643-206ENST00000623985 ARXQ96QS3 562 aa19.93■□□□□ 0.78
LINC00643-206ENST00000623985 KIF13BQ9NQT8 1826 aa19.92■□□□□ 0.78
LINC00643-206ENST00000623985 U2SURPO15042 1029 aaKnown RBP19.92■□□□□ 0.78
LINC00643-206ENST00000623985 POLD1P28340 1107 aa19.92■□□□□ 0.78
LINC00643-206ENST00000623985 PPP2R1AP30153 589 aa19.92■□□□□ 0.78
LINC00643-206ENST00000623985 ATP6V1AP38606 617 aa19.92■□□□□ 0.78
LINC00643-206ENST00000623985 ITPK1Q13572 414 aa19.91■□□□□ 0.78
LINC00643-206ENST00000623985 FHDC1Q9C0D6 1143 aaPredicted RBP19.91■□□□□ 0.78
LINC00643-206ENST00000623985 KCPQ6ZWJ8 1503 aa19.91■□□□□ 0.78
LINC00643-206ENST00000623985 GOLGB1Q14789 3259 aaKnown RBP19.9■□□□□ 0.78
LINC00643-206ENST00000623985 UTRNP46939 3433 aa19.9■□□□□ 0.78
LINC00643-206ENST00000623985 MSH5O43196 834 aa19.9■□□□□ 0.78
LINC00643-206ENST00000623985 MTHFSDQ2M296 383 aaKnown RBP19.9■□□□□ 0.78
LINC00643-206ENST00000623985 SSFA2P28290 1259 aa19.89■□□□□ 0.77
LINC00643-206ENST00000623985 NFATC2IPQ8NCF5 419 aa19.89■□□□□ 0.77
LINC00643-206ENST00000623985 SYT17Q9BSW7 474 aa19.88■□□□□ 0.77
LINC00643-206ENST00000623985 RBM42Q9BTD8 480 aaKnown RBP19.88■□□□□ 0.77
LINC00643-206ENST00000623985 SLC52A2Q9HAB3 445 aa19.88■□□□□ 0.77
LINC00643-206ENST00000623985 CNTNAP4Q9C0A0 1308 aa19.87■□□□□ 0.77
LINC00643-206ENST00000623985 RNMTO43148 476 aaKnown RBP19.87■□□□□ 0.77
LINC00643-206ENST00000623985 AMIGO3Q86WK7 504 aa19.87■□□□□ 0.77
LINC00643-206ENST00000623985 SLC4A9Q96Q91 983 aa19.87■□□□□ 0.77
LINC00643-206ENST00000623985 NUDCQ9Y266 331 aa19.87■□□□□ 0.77
LINC00643-206ENST00000623985 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.86■□□□□ 0.77
LINC00643-206ENST00000623985 DCAF8L1A6NGE4 600 aa19.86■□□□□ 0.77
LINC00643-206ENST00000623985 GNPATO15228 680 aa19.86■□□□□ 0.77
LINC00643-206ENST00000623985 PHF14O94880 888 aa19.86■□□□□ 0.77
LINC00643-206ENST00000623985 GAS2L2Q8NHY3 880 aa19.86■□□□□ 0.77
LINC00643-206ENST00000623985 RSPH6AQ9H0K4 717 aa19.85■□□□□ 0.77
LINC00643-206ENST00000623985 LGR6Q9HBX8 967 aa19.85■□□□□ 0.77
LINC00643-206ENST00000623985 MSL1Q68DK7 614 aa19.84■□□□□ 0.77
LINC00643-206ENST00000623985 KIAA1551Q9HCM1 1747 aa19.84■□□□□ 0.77
LINC00643-206ENST00000623985 LAMB4A4D0S4 1761 aa19.83■□□□□ 0.77
LINC00643-206ENST00000623985 PTCD1O75127 700 aaKnown RBP19.83■□□□□ 0.77
LINC00643-206ENST00000623985 PRKAR2BP31323 418 aa19.83■□□□□ 0.77
LINC00643-206ENST00000623985 RC3H1Q5TC82 1133 aaKnown RBP19.83■□□□□ 0.77
LINC00643-206ENST00000623985 BRCA1P38398 1863 aaKnown RBP19.83■□□□□ 0.76
LINC00643-206ENST00000623985 KDM3BQ7LBC6 1761 aa19.83■□□□□ 0.76
LINC00643-206ENST00000623985 N4BP2Q86UW6 1770 aaPredicted RBP19.81■□□□□ 0.76
LINC00643-206ENST00000623985 GNAT3A8MTJ3 354 aa19.81■□□□□ 0.76
LINC00643-206ENST00000623985 U2AF1L5P0DN76 240 aaPredicted RBP19.81■□□□□ 0.76
LINC00643-206ENST00000623985 U2AF1Q01081 240 aaKnown RBP eCLIP19.81■□□□□ 0.76
LINC00643-206ENST00000623985 RTCBQ9Y3I0 505 aaKnown RBP19.81■□□□□ 0.76
LINC00643-206ENST00000623985 SCN7AQ01118 1682 aa19.81■□□□□ 0.76
LINC00643-206ENST00000623985 ADRA2BP18089 450 aa19.8■□□□□ 0.76
LINC00643-206ENST00000623985 SMIM5Q71RC9 77 aa19.8■□□□□ 0.76
LINC00643-206ENST00000623985 KLHL34Q8N239 644 aa19.8■□□□□ 0.76
LINC00643-206ENST00000623985 AFDNP55196 1824 aaKnown RBP19.8■□□□□ 0.76
LINC00643-206ENST00000623985 CEMIPQ8WUJ3 1361 aa19.8■□□□□ 0.76
LINC00643-206ENST00000623985 BCORQ6W2J9 1755 aa19.79■□□□□ 0.76
LINC00643-206ENST00000623985 FCHSD2O94868 740 aa19.78■□□□□ 0.76
LINC00643-206ENST00000623985 CRKLP46109 303 aaKnown RBP19.78■□□□□ 0.76
LINC00643-206ENST00000623985 RPS6KA4O75676 772 aa19.77■□□□□ 0.76
LINC00643-206ENST00000623985 TEFQ10587 303 aa19.77■□□□□ 0.76
LINC00643-206ENST00000623985 TRAPPC3LQ5T215 181 aa19.77■□□□□ 0.76
LINC00643-206ENST00000623985 PHACTR3Q96KR7 559 aa19.77■□□□□ 0.76
LINC00643-206ENST00000623985 SLC39A6Q13433 755 aa19.76■□□□□ 0.75
LINC00643-206ENST00000623985 RALBP1Q15311 655 aa19.76■□□□□ 0.75
LINC00643-206ENST00000623985 IL17REQ8NFR9 667 aa19.76■□□□□ 0.75
LINC00643-206ENST00000623985 DDX10Q13206 875 aaKnown RBP19.75■□□□□ 0.75
LINC00643-206ENST00000623985 VSIG10Q8N0Z9 540 aa19.75■□□□□ 0.75
LINC00643-206ENST00000623985 NRXN2Q9P2S2 1712 aa19.75■□□□□ 0.75
LINC00643-206ENST00000623985 TTC5Q8N0Z6 440 aa19.74■□□□□ 0.75
LINC00643-206ENST00000623985 NLGN2Q8NFZ4 835 aa19.74■□□□□ 0.75
LINC00643-206ENST00000623985 ARHGEF1Q92888 912 aaKnown RBP19.74■□□□□ 0.75
LINC00643-206ENST00000623985 ARFGEF1Q9Y6D6 1849 aa19.74■□□□□ 0.75
LINC00643-206ENST00000623985 DLEC1Q9Y238 1755 aa19.73■□□□□ 0.75
LINC00643-206ENST00000623985 DNAJC10Q8IXB1 793 aa19.73■□□□□ 0.75
LINC00643-206ENST00000623985 CD2APQ9Y5K6 639 aa19.73■□□□□ 0.75
LINC00643-206ENST00000623985 RFC4P35249 363 aa19.72■□□□□ 0.75
LINC00643-206ENST00000623985 CCDC87Q9NVE4 849 aa19.72■□□□□ 0.75
LINC00643-206ENST00000623985 HEG1Q9ULI3 1381 aa19.71■□□□□ 0.75
LINC00643-206ENST00000623985 NEFMP07197 916 aa19.71■□□□□ 0.75
LINC00643-206ENST00000623985 CYP19A1P11511 503 aaPredicted RBP19.71■□□□□ 0.75
LINC00643-206ENST00000623985 YY1P25490 414 aa19.71■□□□□ 0.75
LINC00643-206ENST00000623985 ZEB1P37275 1124 aaPredicted RBP19.71■□□□□ 0.75
LINC00643-206ENST00000623985 INTS5Q6P9B9 1019 aaKnown RBP19.71■□□□□ 0.75
LINC00643-206ENST00000623985 ZNF790Q6PG37 636 aa19.71■□□□□ 0.75
LINC00643-206ENST00000623985 COL15A1P39059 1388 aa19.7■□□□□ 0.74
LINC00643-206ENST00000623985 C10orf71Q711Q0 1435 aa19.7■□□□□ 0.74
LINC00643-206ENST00000623985 GYS1P13807 737 aa19.7■□□□□ 0.74
LINC00643-206ENST00000623985 NLGN1Q8N2Q7 840 aa19.7■□□□□ 0.74
LINC00643-206ENST00000623985 RTF1Q92541 710 aaKnown RBP19.7■□□□□ 0.74
LINC00643-206ENST00000623985 SOS1Q07889 1333 aaPredicted RBP19.7■□□□□ 0.74
LINC00643-206ENST00000623985 MYBBP1AQ9BQG0 1328 aaKnown RBP19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms