RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 DLG5Q8TDM6 1919 aa20■□□□□ 0.79
LINC00643-205ENST00000623219 SGIP1Q9BQI5 828 aa20■□□□□ 0.79
LINC00643-205ENST00000623219 LOC102724428A0A0B4J2F2 783 aa19.98■□□□□ 0.79
LINC00643-205ENST00000623219 HMOX1P09601 288 aa19.98■□□□□ 0.79
LINC00643-205ENST00000623219 SIK1P57059 783 aa19.98■□□□□ 0.79
LINC00643-205ENST00000623219 ASAP1Q9ULH1 1129 aa19.98■□□□□ 0.79
LINC00643-205ENST00000623219 AKAP4Q5JQC9 854 aa19.96■□□□□ 0.79
LINC00643-205ENST00000623219 ATG3Q9NT62 314 aa19.96■□□□□ 0.79
LINC00643-205ENST00000623219 MAP3K5Q99683 1374 aa19.95■□□□□ 0.79
LINC00643-205ENST00000623219 CABP4P57796 275 aa19.95■□□□□ 0.78
LINC00643-205ENST00000623219 AK7Q96M32 723 aa19.95■□□□□ 0.78
LINC00643-205ENST00000623219 CFAP53Q96M91 514 aa19.95■□□□□ 0.78
LINC00643-205ENST00000623219 FLAD1Q8NFF5 587 aa19.94■□□□□ 0.78
LINC00643-205ENST00000623219 COL23A1Q86Y22 540 aaPredicted RBP19.93■□□□□ 0.78
LINC00643-205ENST00000623219 LINC00116Q8NCU8 138 aa19.93■□□□□ 0.78
LINC00643-205ENST00000623219 ARXQ96QS3 562 aa19.93■□□□□ 0.78
LINC00643-205ENST00000623219 KIF13BQ9NQT8 1826 aa19.92■□□□□ 0.78
LINC00643-205ENST00000623219 U2SURPO15042 1029 aaKnown RBP19.92■□□□□ 0.78
LINC00643-205ENST00000623219 POLD1P28340 1107 aa19.92■□□□□ 0.78
LINC00643-205ENST00000623219 PPP2R1AP30153 589 aa19.92■□□□□ 0.78
LINC00643-205ENST00000623219 ATP6V1AP38606 617 aa19.92■□□□□ 0.78
LINC00643-205ENST00000623219 ITPK1Q13572 414 aa19.91■□□□□ 0.78
LINC00643-205ENST00000623219 FHDC1Q9C0D6 1143 aaPredicted RBP19.91■□□□□ 0.78
LINC00643-205ENST00000623219 KCPQ6ZWJ8 1503 aa19.91■□□□□ 0.78
LINC00643-205ENST00000623219 GOLGB1Q14789 3259 aaKnown RBP19.9■□□□□ 0.78
LINC00643-205ENST00000623219 UTRNP46939 3433 aa19.9■□□□□ 0.78
LINC00643-205ENST00000623219 MSH5O43196 834 aa19.9■□□□□ 0.78
LINC00643-205ENST00000623219 MTHFSDQ2M296 383 aaKnown RBP19.9■□□□□ 0.78
LINC00643-205ENST00000623219 SSFA2P28290 1259 aa19.89■□□□□ 0.77
LINC00643-205ENST00000623219 NFATC2IPQ8NCF5 419 aa19.89■□□□□ 0.77
LINC00643-205ENST00000623219 SYT17Q9BSW7 474 aa19.88■□□□□ 0.77
LINC00643-205ENST00000623219 RBM42Q9BTD8 480 aaKnown RBP19.88■□□□□ 0.77
LINC00643-205ENST00000623219 SLC52A2Q9HAB3 445 aa19.88■□□□□ 0.77
LINC00643-205ENST00000623219 CNTNAP4Q9C0A0 1308 aa19.87■□□□□ 0.77
LINC00643-205ENST00000623219 RNMTO43148 476 aaKnown RBP19.87■□□□□ 0.77
LINC00643-205ENST00000623219 AMIGO3Q86WK7 504 aa19.87■□□□□ 0.77
LINC00643-205ENST00000623219 SLC4A9Q96Q91 983 aa19.87■□□□□ 0.77
LINC00643-205ENST00000623219 NUDCQ9Y266 331 aa19.87■□□□□ 0.77
LINC00643-205ENST00000623219 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP19.86■□□□□ 0.77
LINC00643-205ENST00000623219 DCAF8L1A6NGE4 600 aa19.86■□□□□ 0.77
LINC00643-205ENST00000623219 GNPATO15228 680 aa19.86■□□□□ 0.77
LINC00643-205ENST00000623219 PHF14O94880 888 aa19.86■□□□□ 0.77
LINC00643-205ENST00000623219 GAS2L2Q8NHY3 880 aa19.86■□□□□ 0.77
LINC00643-205ENST00000623219 RSPH6AQ9H0K4 717 aa19.85■□□□□ 0.77
LINC00643-205ENST00000623219 LGR6Q9HBX8 967 aa19.85■□□□□ 0.77
LINC00643-205ENST00000623219 MSL1Q68DK7 614 aa19.84■□□□□ 0.77
LINC00643-205ENST00000623219 KIAA1551Q9HCM1 1747 aa19.84■□□□□ 0.77
LINC00643-205ENST00000623219 LAMB4A4D0S4 1761 aa19.83■□□□□ 0.77
LINC00643-205ENST00000623219 PTCD1O75127 700 aaKnown RBP19.83■□□□□ 0.77
LINC00643-205ENST00000623219 PRKAR2BP31323 418 aa19.83■□□□□ 0.77
LINC00643-205ENST00000623219 RC3H1Q5TC82 1133 aaKnown RBP19.83■□□□□ 0.77
LINC00643-205ENST00000623219 BRCA1P38398 1863 aaKnown RBP19.83■□□□□ 0.76
LINC00643-205ENST00000623219 KDM3BQ7LBC6 1761 aa19.83■□□□□ 0.76
LINC00643-205ENST00000623219 N4BP2Q86UW6 1770 aaPredicted RBP19.81■□□□□ 0.76
LINC00643-205ENST00000623219 GNAT3A8MTJ3 354 aa19.81■□□□□ 0.76
LINC00643-205ENST00000623219 U2AF1L5P0DN76 240 aaPredicted RBP19.81■□□□□ 0.76
LINC00643-205ENST00000623219 U2AF1Q01081 240 aaKnown RBP eCLIP19.81■□□□□ 0.76
LINC00643-205ENST00000623219 RTCBQ9Y3I0 505 aaKnown RBP19.81■□□□□ 0.76
LINC00643-205ENST00000623219 SCN7AQ01118 1682 aa19.81■□□□□ 0.76
LINC00643-205ENST00000623219 ADRA2BP18089 450 aa19.8■□□□□ 0.76
LINC00643-205ENST00000623219 SMIM5Q71RC9 77 aa19.8■□□□□ 0.76
LINC00643-205ENST00000623219 KLHL34Q8N239 644 aa19.8■□□□□ 0.76
LINC00643-205ENST00000623219 AFDNP55196 1824 aaKnown RBP19.8■□□□□ 0.76
LINC00643-205ENST00000623219 CEMIPQ8WUJ3 1361 aa19.8■□□□□ 0.76
LINC00643-205ENST00000623219 BCORQ6W2J9 1755 aa19.79■□□□□ 0.76
LINC00643-205ENST00000623219 FCHSD2O94868 740 aa19.78■□□□□ 0.76
LINC00643-205ENST00000623219 CRKLP46109 303 aaKnown RBP19.78■□□□□ 0.76
LINC00643-205ENST00000623219 RPS6KA4O75676 772 aa19.77■□□□□ 0.76
LINC00643-205ENST00000623219 TEFQ10587 303 aa19.77■□□□□ 0.76
LINC00643-205ENST00000623219 TRAPPC3LQ5T215 181 aa19.77■□□□□ 0.76
LINC00643-205ENST00000623219 PHACTR3Q96KR7 559 aa19.77■□□□□ 0.76
LINC00643-205ENST00000623219 SLC39A6Q13433 755 aa19.76■□□□□ 0.75
LINC00643-205ENST00000623219 RALBP1Q15311 655 aa19.76■□□□□ 0.75
LINC00643-205ENST00000623219 IL17REQ8NFR9 667 aa19.76■□□□□ 0.75
LINC00643-205ENST00000623219 DDX10Q13206 875 aaKnown RBP19.75■□□□□ 0.75
LINC00643-205ENST00000623219 VSIG10Q8N0Z9 540 aa19.75■□□□□ 0.75
LINC00643-205ENST00000623219 NRXN2Q9P2S2 1712 aa19.75■□□□□ 0.75
LINC00643-205ENST00000623219 TTC5Q8N0Z6 440 aa19.74■□□□□ 0.75
LINC00643-205ENST00000623219 NLGN2Q8NFZ4 835 aa19.74■□□□□ 0.75
LINC00643-205ENST00000623219 ARHGEF1Q92888 912 aaKnown RBP19.74■□□□□ 0.75
LINC00643-205ENST00000623219 ARFGEF1Q9Y6D6 1849 aa19.74■□□□□ 0.75
LINC00643-205ENST00000623219 DLEC1Q9Y238 1755 aa19.73■□□□□ 0.75
LINC00643-205ENST00000623219 DNAJC10Q8IXB1 793 aa19.73■□□□□ 0.75
LINC00643-205ENST00000623219 CD2APQ9Y5K6 639 aa19.73■□□□□ 0.75
LINC00643-205ENST00000623219 RFC4P35249 363 aa19.72■□□□□ 0.75
LINC00643-205ENST00000623219 CCDC87Q9NVE4 849 aa19.72■□□□□ 0.75
LINC00643-205ENST00000623219 HEG1Q9ULI3 1381 aa19.71■□□□□ 0.75
LINC00643-205ENST00000623219 NEFMP07197 916 aa19.71■□□□□ 0.75
LINC00643-205ENST00000623219 CYP19A1P11511 503 aaPredicted RBP19.71■□□□□ 0.75
LINC00643-205ENST00000623219 YY1P25490 414 aa19.71■□□□□ 0.75
LINC00643-205ENST00000623219 ZEB1P37275 1124 aaPredicted RBP19.71■□□□□ 0.75
LINC00643-205ENST00000623219 INTS5Q6P9B9 1019 aaKnown RBP19.71■□□□□ 0.75
LINC00643-205ENST00000623219 ZNF790Q6PG37 636 aa19.71■□□□□ 0.75
LINC00643-205ENST00000623219 COL15A1P39059 1388 aa19.7■□□□□ 0.74
LINC00643-205ENST00000623219 C10orf71Q711Q0 1435 aa19.7■□□□□ 0.74
LINC00643-205ENST00000623219 GYS1P13807 737 aa19.7■□□□□ 0.74
LINC00643-205ENST00000623219 NLGN1Q8N2Q7 840 aa19.7■□□□□ 0.74
LINC00643-205ENST00000623219 RTF1Q92541 710 aaKnown RBP19.7■□□□□ 0.74
LINC00643-205ENST00000623219 SOS1Q07889 1333 aaPredicted RBP19.7■□□□□ 0.74
LINC00643-205ENST00000623219 MYBBP1AQ9BQG0 1328 aaKnown RBP19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms