RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 STAG3Q9UJ98 1225 aa17.12■□□□□ 0.33
LDB3-209ENST00000623056 PALD1Q9ULE6 856 aa17.12■□□□□ 0.33
LDB3-209ENST00000623056 HMGN5P82970 282 aaKnown RBP17.11■□□□□ 0.33
LDB3-209ENST00000623056 UTP14CQ5TAP6 766 aaKnown RBP17.11■□□□□ 0.33
LDB3-209ENST00000623056 USP25Q9UHP3 1055 aa17.11■□□□□ 0.33
LDB3-209ENST00000623056 USP48Q86UV5 1035 aa17.1■□□□□ 0.33
LDB3-209ENST00000623056 ESYT1Q9BSJ8 1104 aa17.1■□□□□ 0.33
LDB3-209ENST00000623056 ZHX1Q9UKY1 873 aaPredicted RBP17.1■□□□□ 0.33
LDB3-209ENST00000623056 ZSCAN20P17040 1043 aaPredicted RBP17.1■□□□□ 0.33
LDB3-209ENST00000623056 CDK12Q9NYV4 1490 aaPredicted RBP17.09■□□□□ 0.33
LDB3-209ENST00000623056 C17orf53Q8N3J3 647 aaPredicted RBP17.09■□□□□ 0.33
LDB3-209ENST00000623056 TTC12Q9H892 705 aaPredicted RBP17.09■□□□□ 0.33
LDB3-209ENST00000623056 PPP6R1Q9UPN7 881 aa17.09■□□□□ 0.33
LDB3-209ENST00000623056 MCCP23508 829 aa17.09■□□□□ 0.33
LDB3-209ENST00000623056 HMMRO75330 724 aa17.08■□□□□ 0.33
LDB3-209ENST00000623056 ADCY5O95622 1261 aa17.08■□□□□ 0.33
LDB3-209ENST00000623056 ANAPC15P60006 121 aa17.08■□□□□ 0.32
LDB3-209ENST00000623056 ESF1Q9H501 851 aaKnown RBP17.08■□□□□ 0.32
LDB3-209ENST00000623056 PTPRCP08575 1304 aa17.08■□□□□ 0.32
LDB3-209ENST00000623056 TSHZ3Q63HK5 1081 aa17.07■□□□□ 0.32
LDB3-209ENST00000623056 SPTLC3Q9NUV7 552 aa17.07■□□□□ 0.32
LDB3-209ENST00000623056 CCDC183Q5T5S1 534 aa17.07■□□□□ 0.32
LDB3-209ENST00000623056 WDR33Q9C0J8 1336 aaKnown RBP17.07■□□□□ 0.32
LDB3-209ENST00000623056 ATP7BP35670 1465 aa17.07■□□□□ 0.32
LDB3-209ENST00000623056 SPATA31D1Q6ZQQ2 1576 aa17.06■□□□□ 0.32
LDB3-209ENST00000623056 HAP1P54257 671 aaPredicted RBP17.06■□□□□ 0.32
LDB3-209ENST00000623056 FKBP5Q13451 457 aaPredicted RBP17.06■□□□□ 0.32
LDB3-209ENST00000623056 KIF3AQ9Y496 699 aa17.06■□□□□ 0.32
LDB3-209ENST00000623056 ANO2Q9NQ90 1003 aa17.05■□□□□ 0.32
LDB3-209ENST00000623056 FAM177BA6PVY3 158 aa17.05■□□□□ 0.32
LDB3-209ENST00000623056 HCLS1P14317 486 aaPredicted RBP17.05■□□□□ 0.32
LDB3-209ENST00000623056 TMEM87AQ8NBN3 555 aa17.05■□□□□ 0.32
LDB3-209ENST00000623056 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.05■□□□□ 0.32
LDB3-209ENST00000623056 UPF3BQ9BZI7 483 aaKnown RBP17.05■□□□□ 0.32
LDB3-209ENST00000623056 SALL3Q9BXA9 1300 aa17.04■□□□□ 0.32
LDB3-209ENST00000623056 CBX1P83916 185 aa17.04■□□□□ 0.32
LDB3-209ENST00000623056 NME9Q86XW9 330 aa17.04■□□□□ 0.32
LDB3-209ENST00000623056 PODXL2Q9NZ53 605 aa17.04■□□□□ 0.32
LDB3-209ENST00000623056 TCHHQ07283 1943 aa17.04■□□□□ 0.32
LDB3-209ENST00000623056 CHMLP26374 656 aa17.04■□□□□ 0.32
LDB3-209ENST00000623056 PPP4R3BQ5MIZ7 849 aa17.04■□□□□ 0.32
LDB3-209ENST00000623056 IL17RAQ96F46 866 aa17.04■□□□□ 0.32
LDB3-209ENST00000623056 SRCIN1Q9C0H9 1055 aa17.04■□□□□ 0.32
LDB3-209ENST00000623056 ZRANB1Q9UGI0 708 aa17.04■□□□□ 0.32
LDB3-209ENST00000623056 TUBGCP6Q96RT7 1819 aa17.04■□□□□ 0.32
LDB3-209ENST00000623056 KIAA0232Q92628 1395 aa17.03■□□□□ 0.32
LDB3-209ENST00000623056 CHL1O00533 1208 aa17.03■□□□□ 0.32
LDB3-209ENST00000623056 ATP2B3Q16720 1220 aa17.03■□□□□ 0.32
LDB3-209ENST00000623056 EXOC6BQ9Y2D4 811 aa17.03■□□□□ 0.32
LDB3-209ENST00000623056 A2ML1A8K2U0 1454 aa17.03■□□□□ 0.32
LDB3-209ENST00000623056 RPAP1Q9BWH6 1393 aaPredicted RBP17.03■□□□□ 0.32
LDB3-209ENST00000623056 MX1P20591 662 aa17.03■□□□□ 0.32
LDB3-209ENST00000623056 BCL2L12Q9HB09 334 aa17.03■□□□□ 0.32
LDB3-209ENST00000623056 SSH2Q76I76 1423 aa17.03■□□□□ 0.32
LDB3-209ENST00000623056 AATKQ6ZMQ8 1374 aa17.02■□□□□ 0.32
LDB3-209ENST00000623056 RRS1Q15050 365 aaKnown RBP17.02■□□□□ 0.32
LDB3-209ENST00000623056 CNPY2Q9Y2B0 182 aa17.02■□□□□ 0.32
LDB3-209ENST00000623056 KDM4AO75164 1064 aa17.02■□□□□ 0.31
LDB3-209ENST00000623056 LETM1O95202 739 aaPredicted RBP17.02■□□□□ 0.31
LDB3-209ENST00000623056 SLC4A2P04920 1241 aa17.01■□□□□ 0.31
LDB3-209ENST00000623056 RILPL2Q969X0 211 aa17.01■□□□□ 0.31
LDB3-209ENST00000623056 GTPBP4Q9BZE4 634 aaKnown RBP17.01■□□□□ 0.31
LDB3-209ENST00000623056 EDC4Q6P2E9 1401 aaKnown RBP17.01■□□□□ 0.31
LDB3-209ENST00000623056 TRIM6-TRIM34B2RNG4 842 aa17.01■□□□□ 0.31
LDB3-209ENST00000623056 TPRNQ4KMQ1 711 aa17.01■□□□□ 0.31
LDB3-209ENST00000623056 ALKQ9UM73 1620 aa17■□□□□ 0.31
LDB3-209ENST00000623056 SLC4A10Q6U841 1118 aa17■□□□□ 0.31
LDB3-209ENST00000623056 LRRCC1Q9C099 1032 aa17■□□□□ 0.31
LDB3-209ENST00000623056 PLEKHG5O94827 1062 aa16.99■□□□□ 0.31
LDB3-209ENST00000623056 MCM10Q7L590 875 aa16.99■□□□□ 0.31
LDB3-209ENST00000623056 F6X3S4 739 aa16.99■□□□□ 0.31
LDB3-209ENST00000623056 UBE2HP62256 183 aa16.99■□□□□ 0.31
LDB3-209ENST00000623056 PLPPR3Q6T4P5 718 aa16.99■□□□□ 0.31
LDB3-209ENST00000623056 AEBP1Q8IUX7 1158 aa16.99■□□□□ 0.31
LDB3-209ENST00000623056 KIAA1524Q8TCG1 905 aa16.99■□□□□ 0.31
LDB3-209ENST00000623056 WAPLQ7Z5K2 1190 aa16.98■□□□□ 0.31
LDB3-209ENST00000623056 KCNF1Q9H3M0 494 aa16.98■□□□□ 0.31
LDB3-209ENST00000623056 GNAI2P04899 355 aa16.98■□□□□ 0.31
LDB3-209ENST00000623056 ZSCAN22P10073 491 aaPredicted RBP16.98■□□□□ 0.31
LDB3-209ENST00000623056 CCT4P50991 539 aaKnown RBP16.98■□□□□ 0.31
LDB3-209ENST00000623056 PDCL2Q8N4E4 241 aa16.98■□□□□ 0.31
LDB3-209ENST00000623056 FUCA2Q9BTY2 467 aa16.98■□□□□ 0.31
LDB3-209ENST00000623056 KDM4FA0A1W2PPD8 638 aa16.97■□□□□ 0.31
LDB3-209ENST00000623056 PLCB2Q00722 1185 aa16.97■□□□□ 0.31
LDB3-209ENST00000623056 G2E3Q7L622 706 aa16.97■□□□□ 0.31
LDB3-209ENST00000623056 UNC5CLQ8IV45 518 aa16.97■□□□□ 0.31
LDB3-209ENST00000623056 COG3Q96JB2 828 aa16.97■□□□□ 0.31
LDB3-209ENST00000623056 PYCARDQ9ULZ3 195 aa16.97■□□□□ 0.31
LDB3-209ENST00000623056 AP5Z1O43299 807 aa16.97■□□□□ 0.31
LDB3-209ENST00000623056 HSPA4P34932 840 aa16.97■□□□□ 0.31
LDB3-209ENST00000623056 CEBPAP49715 358 aaPredicted RBP16.97■□□□□ 0.31
LDB3-209ENST00000623056 IL25Q9H293 177 aa16.97■□□□□ 0.31
LDB3-209ENST00000623056 DIAPH3Q9NSV4 1193 aa16.97■□□□□ 0.31
LDB3-209ENST00000623056 RIOK3O14730 519 aaKnown RBP16.96■□□□□ 0.31
LDB3-209ENST00000623056 CHAF1AQ13111 956 aaPredicted RBP16.96■□□□□ 0.3
LDB3-209ENST00000623056 SULT6B1Q6IMI4 303 aa16.96■□□□□ 0.3
LDB3-209ENST00000623056 GIMAP6Q6P9H5 292 aa16.96■□□□□ 0.3
LDB3-209ENST00000623056 STAP2Q9UGK3 403 aa16.96■□□□□ 0.3
LDB3-209ENST00000623056 TNRQ92752 1358 aa16.95■□□□□ 0.3
LDB3-209ENST00000623056 SPDYE4A6NLX3 237 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms