RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 CCDC30Q5VVM6 783 aa13.23□□□□□ -0.29
VPS11-208ENST00000621676 LRRFIP2Q9Y608 721 aaKnown RBP13.23□□□□□ -0.29
VPS11-208ENST00000621676 MAP3K5Q99683 1374 aa13.22□□□□□ -0.29
VPS11-208ENST00000621676 USP32Q8NFA0 1604 aa13.22□□□□□ -0.29
VPS11-208ENST00000621676 CDK12Q9NYV4 1490 aaPredicted RBP13.22□□□□□ -0.29
VPS11-208ENST00000621676 NBPF7P0C2Y1 421 aaPredicted RBP13.22□□□□□ -0.29
VPS11-208ENST00000621676 RIC3Q7Z5B4 369 aa13.22□□□□□ -0.29
VPS11-208ENST00000621676 DAXXQ9UER7 740 aaPredicted RBP13.22□□□□□ -0.29
VPS11-208ENST00000621676 FAM98CQ17RN3 349 aaKnown RBP13.22□□□□□ -0.29
VPS11-208ENST00000621676 SIRT2Q8IXJ6 389 aa13.22□□□□□ -0.29
VPS11-208ENST00000621676 ZBTB40Q9NUA8 1239 aa13.22□□□□□ -0.29
VPS11-208ENST00000621676 MST1RQ04912 1400 aa13.22□□□□□ -0.29
VPS11-208ENST00000621676 ZCRB1Q8TBF4 217 aaKnown RBP13.21□□□□□ -0.29
VPS11-208ENST00000621676 C9orf78Q9NZ63 289 aaPredicted RBP13.21□□□□□ -0.29
VPS11-208ENST00000621676 ASAP1Q9ULH1 1129 aa13.21□□□□□ -0.29
VPS11-208ENST00000621676 AKAP4Q5JQC9 854 aa13.21□□□□□ -0.29
VPS11-208ENST00000621676 EIF4A1P60842 406 aaKnown RBP13.21□□□□□ -0.3
VPS11-208ENST00000621676 COPS6Q7L5N1 327 aa13.21□□□□□ -0.3
VPS11-208ENST00000621676 PA2G4Q9UQ80 394 aaKnown RBP13.21□□□□□ -0.3
VPS11-208ENST00000621676 IQSEC2Q5JU85 1478 aa13.21□□□□□ -0.3
VPS11-208ENST00000621676 SPG7Q9UQ90 795 aa13.2□□□□□ -0.3
VPS11-208ENST00000621676 MAP3K2Q9Y2U5 619 aa13.2□□□□□ -0.3
VPS11-208ENST00000621676 PNMA6EA0A0J9YXQ4 647 aa13.2□□□□□ -0.3
VPS11-208ENST00000621676 IFNL2Q8IZJ0 200 aa13.2□□□□□ -0.3
VPS11-208ENST00000621676 API5Q9BZZ5 524 aaKnown RBP13.2□□□□□ -0.3
VPS11-208ENST00000621676 PHKG2P15735 406 aa13.19□□□□□ -0.3
VPS11-208ENST00000621676 GPTP24298 496 aa13.19□□□□□ -0.3
VPS11-208ENST00000621676 ZNF790Q6PG37 636 aa13.19□□□□□ -0.3
VPS11-208ENST00000621676 CCDC24Q8N4L8 307 aa13.19□□□□□ -0.3
VPS11-208ENST00000621676 SLKQ9H2G2 1235 aaPredicted RBP13.19□□□□□ -0.3
VPS11-208ENST00000621676 KDM2BQ8NHM5 1336 aa13.19□□□□□ -0.3
VPS11-208ENST00000621676 NUTM1Q86Y26 1132 aa13.19□□□□□ -0.3
VPS11-208ENST00000621676 XAGE3Q8WTP9 111 aa13.19□□□□□ -0.3
VPS11-208ENST00000621676 BACH2Q9BYV9 841 aa13.19□□□□□ -0.3
VPS11-208ENST00000621676 IL16Q14005 1332 aa13.18□□□□□ -0.3
VPS11-208ENST00000621676 PRIM1P49642 420 aaKnown RBP13.18□□□□□ -0.3
VPS11-208ENST00000621676 TPRNQ4KMQ1 711 aa13.18□□□□□ -0.3
VPS11-208ENST00000621676 MEX3CQ5U5Q3 659 aaKnown RBP13.18□□□□□ -0.3
VPS11-208ENST00000621676 PTF1AQ7RTS3 328 aa13.18□□□□□ -0.3
VPS11-208ENST00000621676 NALCNQ8IZF0 1738 aa13.18□□□□□ -0.3
VPS11-208ENST00000621676 NOL8Q76FK4 1167 aaKnown RBP13.18□□□□□ -0.3
VPS11-208ENST00000621676 MYD88Q99836 296 aa13.18□□□□□ -0.3
VPS11-208ENST00000621676 TAOK2Q9UL54 1235 aa13.18□□□□□ -0.3
VPS11-208ENST00000621676 ANKARQ7Z5J8 1434 aa13.17□□□□□ -0.3
VPS11-208ENST00000621676 SURF6O75683 361 aaKnown RBP13.17□□□□□ -0.3
VPS11-208ENST00000621676 ALDH1L2Q3SY69 923 aa13.17□□□□□ -0.3
VPS11-208ENST00000621676 RILPL2Q969X0 211 aa13.17□□□□□ -0.3
VPS11-208ENST00000621676 PEAK1Q9H792 1746 aa13.17□□□□□ -0.3
VPS11-208ENST00000621676 PXDNQ92626 1479 aa13.17□□□□□ -0.3
VPS11-208ENST00000621676 KCNQ2O43526 872 aa13.17□□□□□ -0.3
VPS11-208ENST00000621676 IL2RBP14784 551 aa13.17□□□□□ -0.3
VPS11-208ENST00000621676 UBTFL1P0CB47 393 aaPredicted RBP13.16□□□□□ -0.3
VPS11-208ENST00000621676 FAM161AQ3B820 660 aa13.16□□□□□ -0.3
VPS11-208ENST00000621676 AMOTQ4VCS5 1084 aa13.16□□□□□ -0.3
VPS11-208ENST00000621676 NDUFB9Q9Y6M9 179 aa13.16□□□□□ -0.3
VPS11-208ENST00000621676 ARHGEF10O15013 1369 aa13.16□□□□□ -0.3
VPS11-208ENST00000621676 SRGAP3O43295 1099 aa13.16□□□□□ -0.3
VPS11-208ENST00000621676 TRIM6-TRIM34B2RNG4 842 aa13.16□□□□□ -0.3
VPS11-208ENST00000621676 GIGYF1O75420 1035 aaPredicted RBP13.16□□□□□ -0.3
VPS11-208ENST00000621676 SYNE4Q8N205 404 aa13.16□□□□□ -0.3
VPS11-208ENST00000621676 TBC1D2BQ9UPU7 963 aa13.16□□□□□ -0.3
VPS11-208ENST00000621676 BICDL1Q6ZP65 573 aa13.15□□□□□ -0.3
VPS11-208ENST00000621676 MS4A1P11836 297 aa13.15□□□□□ -0.3
VPS11-208ENST00000621676 TTLL7Q6ZT98 887 aa13.15□□□□□ -0.3
VPS11-208ENST00000621676 ITSN1Q15811 1721 aa13.15□□□□□ -0.31
VPS11-208ENST00000621676 SLC52A2Q9HAB3 445 aa13.15□□□□□ -0.31
VPS11-208ENST00000621676 PIK3C2AO00443 1686 aa13.14□□□□□ -0.31
VPS11-208ENST00000621676 SRCIN1Q9C0H9 1055 aa13.14□□□□□ -0.31
VPS11-208ENST00000621676 KIF20BQ96Q89 1820 aa13.14□□□□□ -0.31
VPS11-208ENST00000621676 EXOC5O00471 708 aa13.14□□□□□ -0.31
VPS11-208ENST00000621676 TOM1O60784 492 aa13.14□□□□□ -0.31
VPS11-208ENST00000621676 CHD1LQ86WJ1 897 aa13.14□□□□□ -0.31
VPS11-208ENST00000621676 CRB1P82279 1406 aa13.14□□□□□ -0.31
VPS11-208ENST00000621676 C8orf34Q49A92 452 aa13.13□□□□□ -0.31
VPS11-208ENST00000621676 DNAJC10Q8IXB1 793 aa13.13□□□□□ -0.31
VPS11-208ENST00000621676 TMOD3Q9NYL9 352 aa13.13□□□□□ -0.31
VPS11-208ENST00000621676 UBE3BQ7Z3V4 1068 aa13.13□□□□□ -0.31
VPS11-208ENST00000621676 DNAAF4Q8WXU2 420 aa13.13□□□□□ -0.31
VPS11-208ENST00000621676 PPP1R42Q7Z4L9 355 aa13.12□□□□□ -0.31
VPS11-208ENST00000621676 USP44Q9H0E7 712 aa13.12□□□□□ -0.31
VPS11-208ENST00000621676 CHD2O14647 1828 aaKnown RBP13.11□□□□□ -0.31
VPS11-208ENST00000621676 CEP85Q6P2H3 762 aa13.11□□□□□ -0.31
VPS11-208ENST00000621676 KDRP35968 1356 aa13.11□□□□□ -0.31
VPS11-208ENST00000621676 GNAI2P04899 355 aa13.11□□□□□ -0.31
VPS11-208ENST00000621676 PIGBQ92521 554 aa13.11□□□□□ -0.31
VPS11-208ENST00000621676 DBF4Q9UBU7 674 aaPredicted RBP13.11□□□□□ -0.31
VPS11-208ENST00000621676 MEGF6O75095 1541 aa13.11□□□□□ -0.31
VPS11-208ENST00000621676 SOS2Q07890 1332 aaPredicted RBP13.1□□□□□ -0.31
VPS11-208ENST00000621676 TNS3Q68CZ2 1445 aa13.1□□□□□ -0.31
VPS11-208ENST00000621676 WDR17Q8IZU2 1322 aa13.1□□□□□ -0.31
VPS11-208ENST00000621676 WWC3Q9ULE0 1092 aa13.1□□□□□ -0.31
VPS11-208ENST00000621676 CCDC8Q9H0W5 538 aaPredicted RBP13.1□□□□□ -0.31
VPS11-208ENST00000621676 XRN1Q8IZH2 1706 aaKnown RBP13.1□□□□□ -0.31
VPS11-208ENST00000621676 CT47B1P0C2W7 299 aaPredicted RBP13.1□□□□□ -0.31
VPS11-208ENST00000621676 LARP6Q9BRS8 491 aaKnown RBP13.1□□□□□ -0.31
VPS11-208ENST00000621676 DDB1Q16531 1140 aa13.09□□□□□ -0.31
VPS11-208ENST00000621676 DCAF5Q96JK2 942 aa13.09□□□□□ -0.31
VPS11-208ENST00000621676 A0A087WZG4 1122 aa13.08□□□□□ -0.32
VPS11-208ENST00000621676 HSPA1LP34931 641 aa13.08□□□□□ -0.32
VPS11-208ENST00000621676 ANKRD13DQ6ZTN6 518 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms