RNA–Protein interactions for RNA: ENST00000620864.1

COLCA1-205, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best) BASIC

Gene COLCA1, Length 8,098 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-205ENST00000620864 SMARCC1Q92922 1105 aaPredicted RBP8.37□□□□□ -1.07
COLCA1-205ENST00000620864 NOL7Q9UMY1 257 aaKnown RBP8.37□□□□□ -1.07
COLCA1-205ENST00000620864 TATP17735 454 aaPredicted RBP8.37□□□□□ -1.07
COLCA1-205ENST00000620864 CABP2Q9NPB3 220 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 TRIM22Q8IYM9 498 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 BMP2KQ9NSY1 1161 aaPredicted RBP8.36□□□□□ -1.07
COLCA1-205ENST00000620864 CABP1Q9NZU7 370 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 SPC24Q8NBT2 197 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.36□□□□□ -1.07
COLCA1-205ENST00000620864 K7ELQ4 463 aaPredicted RBP8.36□□□□□ -1.07
COLCA1-205ENST00000620864 CTAGE5O15320 804 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 SPA17Q15506 151 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 CCDC57Q2TAC2 916 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 EHBP1Q8NDI1 1231 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 DDX23Q9BUQ8 820 aaKnown RBP8.36□□□□□ -1.07
COLCA1-205ENST00000620864 UPF3BQ9BZI7 483 aaKnown RBP8.36□□□□□ -1.07
COLCA1-205ENST00000620864 FGFR1OPO95684 399 aaKnown RBP8.36□□□□□ -1.07
COLCA1-205ENST00000620864 FAM193AP78312 1265 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 VTI1AQ96AJ9 217 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 AKNAQ7Z591 1439 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 PPP1R12BO60237 982 aaPredicted RBP8.36□□□□□ -1.07
COLCA1-205ENST00000620864 ATP2B2Q01814 1243 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 IFFO1Q0D2I5 559 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 SREK1Q8WXA9 508 aaKnown RBP8.36□□□□□ -1.07
COLCA1-205ENST00000620864 NUP62CLQ9H1M0 184 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 CEP131Q9UPN4 1083 aa8.36□□□□□ -1.07
COLCA1-205ENST00000620864 ELL2O00472 640 aaPredicted RBP8.35□□□□□ -1.07
COLCA1-205ENST00000620864 KRT18P05783 430 aaKnown RBP8.35□□□□□ -1.07
COLCA1-205ENST00000620864 PAFAH1B1P43034 410 aa8.35□□□□□ -1.07
COLCA1-205ENST00000620864 BCCIPQ9P287 314 aaKnown RBP eCLIP8.35□□□□□ -1.07
COLCA1-205ENST00000620864 CNTLNQ9NXG0 1405 aa8.35□□□□□ -1.07
COLCA1-205ENST00000620864 WASF1Q92558 559 aa8.35□□□□□ -1.07
COLCA1-205ENST00000620864 USH1CQ9Y6N9 552 aa8.35□□□□□ -1.07
COLCA1-205ENST00000620864 BICDL1Q6ZP65 573 aa8.35□□□□□ -1.07
COLCA1-205ENST00000620864 RUNDC1Q96C34 613 aa8.35□□□□□ -1.07
COLCA1-205ENST00000620864 TRERF1Q96PN7 1200 aa8.35□□□□□ -1.07
COLCA1-205ENST00000620864 CDCA7Q9BWT1 371 aaPredicted RBP8.35□□□□□ -1.07
COLCA1-205ENST00000620864 SRCIN1Q9C0H9 1055 aa8.35□□□□□ -1.07
COLCA1-205ENST00000620864 STMN4Q9H169 189 aaPredicted RBP8.35□□□□□ -1.07
COLCA1-205ENST00000620864 GNAI3P08754 354 aa8.35□□□□□ -1.07
COLCA1-205ENST00000620864 TBC1D2BQ9UPU7 963 aa8.35□□□□□ -1.07
COLCA1-205ENST00000620864 CCDC7Q96M83 1385 aa8.35□□□□□ -1.07
COLCA1-205ENST00000620864 NOL3O60936 208 aaKnown RBP8.35□□□□□ -1.07
COLCA1-205ENST00000620864 TUBBP07437 444 aa8.35□□□□□ -1.07
COLCA1-205ENST00000620864 MAP3K11Q16584 847 aa8.34□□□□□ -1.07
COLCA1-205ENST00000620864 RNF187Q5TA31 235 aaPredicted RBP8.34□□□□□ -1.07
COLCA1-205ENST00000620864 KRT222Q8N1A0 295 aa8.34□□□□□ -1.07
COLCA1-205ENST00000620864 CHMP4BP1P59074 171 aa8.34□□□□□ -1.07
COLCA1-205ENST00000620864 ANKS4BQ8N8V4 417 aa8.34□□□□□ -1.07
COLCA1-205ENST00000620864 USO1O60763 962 aaKnown RBP8.34□□□□□ -1.07
COLCA1-205ENST00000620864 GRIPAP1Q4V328 841 aa8.34□□□□□ -1.07
COLCA1-205ENST00000620864 CYP46A1Q9Y6A2 500 aa8.34□□□□□ -1.07
COLCA1-205ENST00000620864 KIF6Q6ZMV9 814 aa8.34□□□□□ -1.07
COLCA1-205ENST00000620864 NCKAP5LQ9HCH0 1330 aa8.34□□□□□ -1.07
COLCA1-205ENST00000620864 PDE3AQ14432 1141 aa8.34□□□□□ -1.07
COLCA1-205ENST00000620864 BRPF1P55201 1214 aaPredicted RBP8.34□□□□□ -1.07
COLCA1-205ENST00000620864 KRT32Q14532 448 aa8.34□□□□□ -1.07
COLCA1-205ENST00000620864 CEP112Q8N8E3 955 aa8.34□□□□□ -1.07
COLCA1-205ENST00000620864 BRD4O60885 1362 aaPredicted RBP8.34□□□□□ -1.07
COLCA1-205ENST00000620864 A6NNZ2 444 aa8.34□□□□□ -1.08
COLCA1-205ENST00000620864 FERP16591 822 aa8.34□□□□□ -1.08
COLCA1-205ENST00000620864 CCDC6Q16204 474 aa8.34□□□□□ -1.08
COLCA1-205ENST00000620864 TUBB8Q3ZCM7 444 aa8.34□□□□□ -1.08
COLCA1-205ENST00000620864 POLA1P09884 1462 aaPredicted RBP8.34□□□□□ -1.08
COLCA1-205ENST00000620864 CFTRP13569 1480 aa8.34□□□□□ -1.08
COLCA1-205ENST00000620864 MPHOSPH10O00566 681 aaKnown RBP8.33□□□□□ -1.08
COLCA1-205ENST00000620864 ZFYP08048 801 aaPredicted RBP8.33□□□□□ -1.08
COLCA1-205ENST00000620864 AIMP1Q12904 312 aaKnown RBP8.33□□□□□ -1.08
COLCA1-205ENST00000620864 TTC14Q96N46 770 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 PRAM1Q96QH2 718 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 DNAJC21Q5F1R6 531 aaKnown RBP8.33□□□□□ -1.08
COLCA1-205ENST00000620864 PSMD1Q99460 953 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 CABP4P57796 275 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 A0A1B0GUA9 196 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 TDO2P48775 406 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 RSRC1Q96IZ7 334 aaKnown RBP8.33□□□□□ -1.08
COLCA1-205ENST00000620864 ALS2CR12Q96Q35 445 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 CEP83Q9Y592 693 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 RRBP1Q9P2E9 1410 aaKnown RBP8.33□□□□□ -1.08
COLCA1-205ENST00000620864 MSH6P52701 1360 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 FIBPO43427 364 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 MCM4P33991 863 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 ME1P48163 572 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 NEK4P51957 841 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 SMG6Q86US8 1419 aaKnown RBP8.33□□□□□ -1.08
COLCA1-205ENST00000620864 SEC24BO95487 1268 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 ANO10Q9NW15 660 aa8.33□□□□□ -1.08
COLCA1-205ENST00000620864 FMNL2Q96PY5 1086 aa8.32□□□□□ -1.08
COLCA1-205ENST00000620864 HMGXB3Q12766 1538 aa8.32□□□□□ -1.08
COLCA1-205ENST00000620864 SRRTQ9BXP5 876 aaKnown RBP8.32□□□□□ -1.08
COLCA1-205ENST00000620864 TMEM106CQ9BVX2 250 aa8.32□□□□□ -1.08
COLCA1-205ENST00000620864 STK32BQ9NY57 414 aa8.32□□□□□ -1.08
COLCA1-205ENST00000620864 FAM184BQ9ULE4 1060 aa8.32□□□□□ -1.08
COLCA1-205ENST00000620864 CCDC183Q5T5S1 534 aa8.32□□□□□ -1.08
COLCA1-205ENST00000620864 KCNG4Q8TDN1 519 aa8.32□□□□□ -1.08
COLCA1-205ENST00000620864 NAP1L3Q99457 506 aaPredicted RBP8.32□□□□□ -1.08
COLCA1-205ENST00000620864 CCDC171Q6TFL3 1326 aa8.32□□□□□ -1.08
COLCA1-205ENST00000620864 DNMBPQ6XZF7 1577 aa8.32□□□□□ -1.08
COLCA1-205ENST00000620864 MIA2Q96PC5 1412 aa8.32□□□□□ -1.08
COLCA1-205ENST00000620864 CKAP4Q07065 602 aaKnown RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms