RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 ZNF530Q6P9A1 599 aaPredicted RBP21.55■■□□□ 1.04
BRCA1-228ENST00000618469 MPRIPQ6WCQ1 1025 aa21.55■■□□□ 1.04
BRCA1-228ENST00000618469 HMOX1P09601 288 aa21.54■■□□□ 1.04
BRCA1-228ENST00000618469 SMIM5Q71RC9 77 aa21.54■■□□□ 1.04
BRCA1-228ENST00000618469 GPBP1L1Q9HC44 474 aaPredicted RBP21.54■■□□□ 1.04
BRCA1-228ENST00000618469 PPP2R1AP30153 589 aa21.53■■□□□ 1.04
BRCA1-228ENST00000618469 AMOTQ4VCS5 1084 aa21.53■■□□□ 1.04
BRCA1-228ENST00000618469 PALLDQ8WX93 1383 aa21.52■■□□□ 1.04
BRCA1-228ENST00000618469 CFAP53Q96M91 514 aa21.52■■□□□ 1.04
BRCA1-228ENST00000618469 C5P01031 1676 aa21.52■■□□□ 1.04
BRCA1-228ENST00000618469 KDM6AO15550 1401 aaPredicted RBP21.52■■□□□ 1.04
BRCA1-228ENST00000618469 U2SURPO15042 1029 aaKnown RBP21.51■■□□□ 1.03
BRCA1-228ENST00000618469 C1orf141Q5JVX7 400 aa21.5■■□□□ 1.03
BRCA1-228ENST00000618469 TMOD3Q9NYL9 352 aa21.5■■□□□ 1.03
BRCA1-228ENST00000618469 HSP90AB1P08238 724 aaKnown RBP21.49■■□□□ 1.03
BRCA1-228ENST00000618469 SCN11AQ9UI33 1791 aa21.48■■□□□ 1.03
BRCA1-228ENST00000618469 VIRMAQ69YN4 1812 aaKnown RBP21.48■■□□□ 1.03
BRCA1-228ENST00000618469 TAF1LQ8IZX4 1826 aa21.48■■□□□ 1.03
BRCA1-228ENST00000618469 DDX10Q13206 875 aaKnown RBP21.48■■□□□ 1.03
BRCA1-228ENST00000618469 PIGBQ92521 554 aa21.48■■□□□ 1.03
BRCA1-228ENST00000618469 HSPA6P17066 643 aa21.47■■□□□ 1.03
BRCA1-228ENST00000618469 AMIGO3Q86WK7 504 aa21.47■■□□□ 1.03
BRCA1-228ENST00000618469 DCAF5Q96JK2 942 aa21.47■■□□□ 1.03
BRCA1-228ENST00000618469 CD2APQ9Y5K6 639 aa21.46■■□□□ 1.03
BRCA1-228ENST00000618469 PHF14O94880 888 aa21.45■■□□□ 1.02
BRCA1-228ENST00000618469 SMARCC1Q92922 1105 aaPredicted RBP21.45■■□□□ 1.02
BRCA1-228ENST00000618469 ADCY9O60503 1353 aa21.43■■□□□ 1.02
BRCA1-228ENST00000618469 C4BP0C0L5 1744 aa21.43■■□□□ 1.02
BRCA1-228ENST00000618469 ERVV-2B6SEH9 535 aa21.42■■□□□ 1.02
BRCA1-228ENST00000618469 MRC1P22897 1456 aa21.42■■□□□ 1.02
BRCA1-228ENST00000618469 AKAP4Q5JQC9 854 aa21.42■■□□□ 1.02
BRCA1-228ENST00000618469 ADAMTS7Q9UKP4 1686 aa21.42■■□□□ 1.02
BRCA1-228ENST00000618469 NUDCQ9Y266 331 aa21.42■■□□□ 1.02
BRCA1-228ENST00000618469 MTHFSDQ2M296 383 aaKnown RBP21.41■■□□□ 1.02
BRCA1-228ENST00000618469 ASAP1Q9ULH1 1129 aa21.41■■□□□ 1.02
BRCA1-228ENST00000618469 CABP4P57796 275 aa21.4■■□□□ 1.02
BRCA1-228ENST00000618469 U2AF1L5P0DN76 240 aaPredicted RBP21.39■■□□□ 1.01
BRCA1-228ENST00000618469 U2AF1Q01081 240 aaKnown RBP eCLIP21.39■■□□□ 1.01
BRCA1-228ENST00000618469 AK7Q96M32 723 aa21.39■■□□□ 1.01
BRCA1-228ENST00000618469 ATG3Q9NT62 314 aa21.39■■□□□ 1.01
BRCA1-228ENST00000618469 LOC102724428A0A0B4J2F2 783 aa21.38■■□□□ 1.01
BRCA1-228ENST00000618469 PRKAR2BP31323 418 aa21.38■■□□□ 1.01
BRCA1-228ENST00000618469 SIK1P57059 783 aa21.38■■□□□ 1.01
BRCA1-228ENST00000618469 RSPH6AQ9H0K4 717 aa21.38■■□□□ 1.01
BRCA1-228ENST00000618469 UBR3Q6ZT12 1888 aa21.38■■□□□ 1.01
BRCA1-228ENST00000618469 ZNF831Q5JPB2 1677 aa21.37■■□□□ 1.01
BRCA1-228ENST00000618469 RALBP1Q15311 655 aa21.37■■□□□ 1.01
BRCA1-228ENST00000618469 FLAD1Q8NFF5 587 aa21.37■■□□□ 1.01
BRCA1-228ENST00000618469 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.36■■□□□ 1.01
BRCA1-228ENST00000618469 KIF3CO14782 793 aa21.36■■□□□ 1.01
BRCA1-228ENST00000618469 GAS2L2Q8NHY3 880 aa21.36■■□□□ 1.01
BRCA1-228ENST00000618469 COL5A3P25940 1745 aaPredicted RBP21.35■■□□□ 1.01
BRCA1-228ENST00000618469 RNMTO43148 476 aaKnown RBP21.34■■□□□ 1.01
BRCA1-228ENST00000618469 NFATC2IPQ8NCF5 419 aa21.34■■□□□ 1.01
BRCA1-228ENST00000618469 LGR6Q9HBX8 967 aa21.34■■□□□ 1.01
BRCA1-228ENST00000618469 TJP1Q07157 1748 aa21.33■■□□□ 1.01
BRCA1-228ENST00000618469 HMGB2P26583 209 aaKnown RBP21.33■■□□□ 1.01
BRCA1-228ENST00000618469 ATP6V1AP38606 617 aa21.33■■□□□ 1.01
BRCA1-228ENST00000618469 LINC00116Q8NCU8 138 aa21.33■■□□□ 1.01
BRCA1-228ENST00000618469 RBM42Q9BTD8 480 aaKnown RBP21.33■■□□□ 1.01
BRCA1-228ENST00000618469 SLC52A2Q9HAB3 445 aa21.33■■□□□ 1.01
BRCA1-228ENST00000618469 CICQ96RK0 1608 aaPredicted RBP21.33■■□□□ 1
BRCA1-228ENST00000618469 MYBBP1AQ9BQG0 1328 aaKnown RBP21.32■■□□□ 1
BRCA1-228ENST00000618469 ITPK1Q13572 414 aa21.32■■□□□ 1
BRCA1-228ENST00000618469 PHACTR3Q96KR7 559 aa21.32■■□□□ 1
BRCA1-228ENST00000618469 SIPA1L3O60292 1781 aaPredicted RBP21.32■■□□□ 1
BRCA1-228ENST00000618469 N4BP2Q86UW6 1770 aaPredicted RBP21.31■■□□□ 1
BRCA1-228ENST00000618469 GNAT3A8MTJ3 354 aa21.3■■□□□ 1
BRCA1-228ENST00000618469 FCHSD2O94868 740 aa21.3■■□□□ 1
BRCA1-228ENST00000618469 UBR2Q8IWV8 1755 aa21.3■■□□□ 1
BRCA1-228ENST00000618469 SLC4A9Q96Q91 983 aa21.29■■□□□ 1
BRCA1-228ENST00000618469 PTCD1O75127 700 aaKnown RBP21.28■■□□□ 1
BRCA1-228ENST00000618469 KCPQ6ZWJ8 1503 aa21.28■■□□□ 1
BRCA1-228ENST00000618469 GNPATO15228 680 aa21.27■■□□□ 1
BRCA1-228ENST00000618469 DLG5Q8TDM6 1919 aa21.26■□□□□ 0.99
BRCA1-228ENST00000618469 A0A0G2JLW4 131 aa21.26■□□□□ 0.99
BRCA1-228ENST00000618469 MMP10P09238 476 aa21.26■□□□□ 0.99
BRCA1-228ENST00000618469 BCS1LQ9Y276 419 aa21.26■□□□□ 0.99
BRCA1-228ENST00000618469 SSFA2P28290 1259 aa21.25■□□□□ 0.99
BRCA1-228ENST00000618469 APLP1P51693 650 aa21.25■□□□□ 0.99
BRCA1-228ENST00000618469 HTRA3P83110 453 aa21.25■□□□□ 0.99
BRCA1-228ENST00000618469 TEFQ10587 303 aa21.25■□□□□ 0.99
BRCA1-228ENST00000618469 SLC39A6Q13433 755 aa21.25■□□□□ 0.99
BRCA1-228ENST00000618469 NMRK2Q9NPI5 230 aa21.25■□□□□ 0.99
BRCA1-228ENST00000618469 CEMIPQ8WUJ3 1361 aa21.24■□□□□ 0.99
BRCA1-228ENST00000618469 ZNF316A6NFI3 1004 aaPredicted RBP21.24■□□□□ 0.99
BRCA1-228ENST00000618469 NEFMP07197 916 aa21.24■□□□□ 0.99
BRCA1-228ENST00000618469 ARHGAP27Q6ZUM4 889 aa21.24■□□□□ 0.99
BRCA1-228ENST00000618469 DNAJC5GQ8N7S2 189 aa21.24■□□□□ 0.99
BRCA1-228ENST00000618469 IL17REQ8NFR9 667 aa21.24■□□□□ 0.99
BRCA1-228ENST00000618469 PRKRIP1Q9H875 184 aaPredicted RBP21.24■□□□□ 0.99
BRCA1-228ENST00000618469 C4AP0C0L4 1744 aa21.23■□□□□ 0.99
BRCA1-228ENST00000618469 KIAA1551Q9HCM1 1747 aa21.23■□□□□ 0.99
BRCA1-228ENST00000618469 CNTNAP4Q9C0A0 1308 aa21.23■□□□□ 0.99
BRCA1-228ENST00000618469 MYH14Q7Z406 1995 aaKnown RBP21.23■□□□□ 0.99
BRCA1-228ENST00000618469 PXDNLA1KZ92 1463 aa21.22■□□□□ 0.99
BRCA1-228ENST00000618469 MAPK8IP3Q9UPT6 1336 aa21.22■□□□□ 0.99
BRCA1-228ENST00000618469 RTF1Q92541 710 aaKnown RBP21.21■□□□□ 0.99
BRCA1-228ENST00000618469 TOMM70O94826 608 aa21.2■□□□□ 0.98
BRCA1-228ENST00000618469 MCM10Q7L590 875 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms