RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 DHX8Q14562 1220 aaKnown RBP16.48■□□□□ 0.23
CPSF1-212ENST00000616140 U3KPZ7 1027 aaPredicted RBP16.48■□□□□ 0.23
CPSF1-212ENST00000616140 CUL7Q14999 1698 aa16.48■□□□□ 0.23
CPSF1-212ENST00000616140 ZNHIT6Q9NWK9 470 aaKnown RBP16.48■□□□□ 0.23
CPSF1-212ENST00000616140 ADGRL1O94910 1474 aa16.48■□□□□ 0.23
CPSF1-212ENST00000616140 IMMTQ16891 758 aaKnown RBP16.47■□□□□ 0.23
CPSF1-212ENST00000616140 SH2B1Q9NRF2 756 aaPredicted RBP16.47■□□□□ 0.23
CPSF1-212ENST00000616140 DACH1Q9UI36 760 aa16.47■□□□□ 0.23
CPSF1-212ENST00000616140 BAG4O95429 457 aaKnown RBP16.47■□□□□ 0.23
CPSF1-212ENST00000616140 CCDC183Q5T5S1 534 aa16.47■□□□□ 0.23
CPSF1-212ENST00000616140 CCAR1Q8IX12 1150 aaKnown RBP16.47■□□□□ 0.23
CPSF1-212ENST00000616140 USP25Q9UHP3 1055 aa16.47■□□□□ 0.23
CPSF1-212ENST00000616140 PTPRCP08575 1304 aa16.47■□□□□ 0.23
CPSF1-212ENST00000616140 FOXO3O43524 673 aa16.47■□□□□ 0.23
CPSF1-212ENST00000616140 ATP2B2Q01814 1243 aa16.46■□□□□ 0.23
CPSF1-212ENST00000616140 MYD88Q99836 296 aa16.46■□□□□ 0.23
CPSF1-212ENST00000616140 LRP2BPQ9P2M1 347 aa16.46■□□□□ 0.23
CPSF1-212ENST00000616140 DBF4Q9UBU7 674 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-212ENST00000616140 HDAC1Q13547 482 aaPredicted RBP16.46■□□□□ 0.23
CPSF1-212ENST00000616140 CFAP100Q494V2 611 aa16.46■□□□□ 0.23
CPSF1-212ENST00000616140 MEX3CQ5U5Q3 659 aaKnown RBP16.46■□□□□ 0.23
CPSF1-212ENST00000616140 CCDC66A2RUB6 948 aa16.45■□□□□ 0.22
CPSF1-212ENST00000616140 RRP9O43818 475 aaKnown RBP16.45■□□□□ 0.22
CPSF1-212ENST00000616140 ABCF2Q9UG63 623 aa16.45■□□□□ 0.22
CPSF1-212ENST00000616140 KIF14Q15058 1648 aa16.45■□□□□ 0.22
CPSF1-212ENST00000616140 NSD2O96028 1365 aa16.45■□□□□ 0.22
CPSF1-212ENST00000616140 KRT18P05783 430 aaKnown RBP16.45■□□□□ 0.22
CPSF1-212ENST00000616140 GPATCH8Q9UKJ3 1502 aaKnown RBP16.45■□□□□ 0.22
CPSF1-212ENST00000616140 CBFA2T2O43439 604 aa16.45■□□□□ 0.22
CPSF1-212ENST00000616140 GUCY1B3Q02153 619 aa16.45■□□□□ 0.22
CPSF1-212ENST00000616140 METTL24Q5JXM2 366 aa16.45■□□□□ 0.22
CPSF1-212ENST00000616140 ZFYVE27Q5T4F4 411 aa16.45■□□□□ 0.22
CPSF1-212ENST00000616140 CKAP2LQ8IYA6 745 aa16.45■□□□□ 0.22
CPSF1-212ENST00000616140 AIDAQ96BJ3 306 aa16.45■□□□□ 0.22
CPSF1-212ENST00000616140 IL16Q14005 1332 aa16.45■□□□□ 0.22
CPSF1-212ENST00000616140 STIM1Q13586 685 aa16.45■□□□□ 0.22
CPSF1-212ENST00000616140 AXDND1Q5T1B0 1012 aaPredicted RBP16.45■□□□□ 0.22
CPSF1-212ENST00000616140 ECHDC1Q9NTX5 307 aa16.45■□□□□ 0.22
CPSF1-212ENST00000616140 NOL7Q9UMY1 257 aaKnown RBP16.45■□□□□ 0.22
CPSF1-212ENST00000616140 RAI14Q9P0K7 980 aa16.44■□□□□ 0.22
CPSF1-212ENST00000616140 AMOTL2Q9Y2J4 779 aa16.44■□□□□ 0.22
CPSF1-212ENST00000616140 BICRAQ9NZM4 1560 aa16.44■□□□□ 0.22
CPSF1-212ENST00000616140 IFIT1P09914 478 aaKnown RBP16.44■□□□□ 0.22
CPSF1-212ENST00000616140 TFIP11Q9UBB9 837 aaKnown RBP16.44■□□□□ 0.22
CPSF1-212ENST00000616140 ODF2Q5BJF6 829 aa16.44■□□□□ 0.22
CPSF1-212ENST00000616140 TTC22Q5TAA0 569 aa16.44■□□□□ 0.22
CPSF1-212ENST00000616140 MEIS3Q99687 375 aa16.43■□□□□ 0.22
CPSF1-212ENST00000616140 THOC2Q8NI27 1593 aaKnown RBP16.43■□□□□ 0.22
CPSF1-212ENST00000616140 NUCB1Q02818 461 aa16.43■□□□□ 0.22
CPSF1-212ENST00000616140 NOM1Q5C9Z4 860 aaKnown RBP16.43■□□□□ 0.22
CPSF1-212ENST00000616140 PIBF1Q8WXW3 757 aa16.43■□□□□ 0.22
CPSF1-212ENST00000616140 PI4KAP2A4QPH2 592 aa16.43■□□□□ 0.22
CPSF1-212ENST00000616140 AMOTQ4VCS5 1084 aa16.43■□□□□ 0.22
CPSF1-212ENST00000616140 PPP1R42Q7Z4L9 355 aa16.43■□□□□ 0.22
CPSF1-212ENST00000616140 PI4KAP1Q8N8J0 262 aa16.43■□□□□ 0.22
CPSF1-212ENST00000616140 PHF8Q9UPP1 1060 aa16.43■□□□□ 0.22
CPSF1-212ENST00000616140 TNNQ9UQP3 1299 aa16.43■□□□□ 0.22
CPSF1-212ENST00000616140 PARD3Q8TEW0 1356 aa16.43■□□□□ 0.22
CPSF1-212ENST00000616140 SFPQP23246 707 aaKnown RBP eCLIP16.43■□□□□ 0.22
CPSF1-212ENST00000616140 C8orf34Q49A92 452 aa16.43■□□□□ 0.22
CPSF1-212ENST00000616140 ZHX3Q9H4I2 956 aa16.43■□□□□ 0.22
CPSF1-212ENST00000616140 H0YHG0 523 aa16.42■□□□□ 0.22
CPSF1-212ENST00000616140 ANXA1P04083 346 aa16.42■□□□□ 0.22
CPSF1-212ENST00000616140 SKIDA1Q1XH10 827 aa16.42■□□□□ 0.22
CPSF1-212ENST00000616140 DEF6Q9H4E7 631 aa16.42■□□□□ 0.22
CPSF1-212ENST00000616140 CWC15Q9P013 229 aaKnown RBP16.42■□□□□ 0.22
CPSF1-212ENST00000616140 SMTNL1A8MU46 457 aa16.42■□□□□ 0.22
CPSF1-212ENST00000616140 KLHL40Q2TBA0 621 aa16.42■□□□□ 0.22
CPSF1-212ENST00000616140 TESK2Q96S53 571 aa16.42■□□□□ 0.22
CPSF1-212ENST00000616140 A0A087WZG4 1122 aa16.41■□□□□ 0.22
CPSF1-212ENST00000616140 SDSP20132 328 aa16.41■□□□□ 0.22
CPSF1-212ENST00000616140 DHX29Q7Z478 1369 aaKnown RBP16.41■□□□□ 0.22
CPSF1-212ENST00000616140 ARHGAP45Q92619 1136 aa16.41■□□□□ 0.22
CPSF1-212ENST00000616140 C8orf76Q96K31 380 aa16.41■□□□□ 0.22
CPSF1-212ENST00000616140 FAM135AQ9P2D6 1515 aa16.41■□□□□ 0.22
CPSF1-212ENST00000616140 STX6O43752 255 aa16.41■□□□□ 0.22
CPSF1-212ENST00000616140 RLBP1P12271 317 aa16.41■□□□□ 0.22
CPSF1-212ENST00000616140 CCDC82Q8N4S0 544 aa16.41■□□□□ 0.22
CPSF1-212ENST00000616140 SOGA3Q5TF21 947 aa16.41■□□□□ 0.22
CPSF1-212ENST00000616140 PDCL2Q8N4E4 241 aa16.41■□□□□ 0.22
CPSF1-212ENST00000616140 UBXN4Q92575 508 aa16.41■□□□□ 0.22
CPSF1-212ENST00000616140 PLEKHH1Q9ULM0 1364 aa16.4■□□□□ 0.22
CPSF1-212ENST00000616140 HSP90AB2PQ58FF8 381 aa16.4■□□□□ 0.22
CPSF1-212ENST00000616140 ANO10Q9NW15 660 aa16.4■□□□□ 0.22
CPSF1-212ENST00000616140 RBM27Q9P2N5 1060 aaKnown RBP16.4■□□□□ 0.22
CPSF1-212ENST00000616140 STARD3NLO95772 234 aa16.4■□□□□ 0.22
CPSF1-212ENST00000616140 AKAP2Q9Y2D5 859 aa16.4■□□□□ 0.22
CPSF1-212ENST00000616140 PTPN14Q15678 1187 aa16.4■□□□□ 0.22
CPSF1-212ENST00000616140 TANGO6Q9C0B7 1094 aa16.4■□□□□ 0.22
CPSF1-212ENST00000616140 RALGAPBQ86X10 1494 aa16.4■□□□□ 0.22
CPSF1-212ENST00000616140 ANKRD36BQ8N2N9 1353 aa16.39■□□□□ 0.21
CPSF1-212ENST00000616140 SSBP05455 408 aaKnown RBP eCLIP16.39■□□□□ 0.21
CPSF1-212ENST00000616140 WASF1Q92558 559 aa16.39■□□□□ 0.21
CPSF1-212ENST00000616140 URB2Q14146 1524 aaKnown RBP16.39■□□□□ 0.21
CPSF1-212ENST00000616140 ZNF608Q9ULD9 1512 aaPredicted RBP16.39■□□□□ 0.21
CPSF1-212ENST00000616140 CCT2P78371 535 aaKnown RBP16.39■□□□□ 0.21
CPSF1-212ENST00000616140 HYPKQ9NX55 129 aa16.39■□□□□ 0.21
CPSF1-212ENST00000616140 LAMC3Q9Y6N6 1575 aa16.39■□□□□ 0.21
CPSF1-212ENST00000616140 TTC21BQ7Z4L5 1316 aa16.39■□□□□ 0.21
CPSF1-212ENST00000616140 LEKR1Q6ZMV7 388 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms