RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 PSMA5P28066 241 aa10.73□□□□□ -0.69
PDLIM5-222ENST00000615540 MPNDQ8N594 471 aa10.73□□□□□ -0.69
PDLIM5-222ENST00000615540 BOLA2Q9H3K6 86 aa10.73□□□□□ -0.69
PDLIM5-222ENST00000615540 MTMR7Q9Y216 660 aa10.73□□□□□ -0.69
PDLIM5-222ENST00000615540 MAP3K4Q9Y6R4 1608 aa10.73□□□□□ -0.69
PDLIM5-222ENST00000615540 RAD21O60216 631 aa10.73□□□□□ -0.69
PDLIM5-222ENST00000615540 EYA1Q99502 592 aa10.73□□□□□ -0.69
PDLIM5-222ENST00000615540 PDRG1Q9NUG6 133 aa10.73□□□□□ -0.69
PDLIM5-222ENST00000615540 PRPF40BQ6NWY9 871 aaKnown RBP10.73□□□□□ -0.69
PDLIM5-222ENST00000615540 UPF3BQ9BZI7 483 aaKnown RBP10.73□□□□□ -0.69
PDLIM5-222ENST00000615540 MCM4P33991 863 aa10.73□□□□□ -0.69
PDLIM5-222ENST00000615540 TPM4P67936 248 aa10.73□□□□□ -0.69
PDLIM5-222ENST00000615540 PI4KAP2A4QPH2 592 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 ATP5J2-PTCD1G3V325 749 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 HOXC9P31274 260 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 PI4KAP1Q8N8J0 262 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 RNF123Q5XPI4 1314 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 TTC21AQ8NDW8 1320 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 CHMP4CQ96CF2 233 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 ABCC3O15438 1527 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 G2E3Q7L622 706 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 CYP46A1Q9Y6A2 500 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 NPC1L1Q9UHC9 1359 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 EDC4Q6P2E9 1401 aaKnown RBP10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 KIF3AQ9Y496 699 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 ABCA6Q8N139 1617 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 NRDCO43847 1150 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 SYNE3Q6ZMZ3 975 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 METP08581 1390 aa10.72□□□□□ -0.69
PDLIM5-222ENST00000615540 TRDNQ13061 729 aa10.71□□□□□ -0.69
PDLIM5-222ENST00000615540 AMOTQ4VCS5 1084 aa10.71□□□□□ -0.69
PDLIM5-222ENST00000615540 PPP1R42Q7Z4L9 355 aa10.71□□□□□ -0.69
PDLIM5-222ENST00000615540 TMX4Q9H1E5 349 aaPredicted RBP10.71□□□□□ -0.69
PDLIM5-222ENST00000615540 ANO8Q9HCE9 1232 aaPredicted RBP10.71□□□□□ -0.69
PDLIM5-222ENST00000615540 MAP3K19Q56UN5 1328 aa10.71□□□□□ -0.69
PDLIM5-222ENST00000615540 RRP12Q5JTH9 1297 aaKnown RBP10.71□□□□□ -0.69
PDLIM5-222ENST00000615540 BICDL1Q6ZP65 573 aa10.71□□□□□ -0.69
PDLIM5-222ENST00000615540 EFCAB6Q5THR3 1501 aa10.71□□□□□ -0.7
PDLIM5-222ENST00000615540 LRRFIP1Q32MZ4 808 aaKnown RBP10.71□□□□□ -0.7
PDLIM5-222ENST00000615540 QRICH2Q9H0J4 1663 aa10.71□□□□□ -0.7
PDLIM5-222ENST00000615540 MRE11P49959 708 aa10.71□□□□□ -0.7
PDLIM5-222ENST00000615540 CCDC158Q5M9N0 1113 aa10.71□□□□□ -0.7
PDLIM5-222ENST00000615540 TNPO1Q92973 898 aaKnown RBP10.71□□□□□ -0.7
PDLIM5-222ENST00000615540 SDSP20132 328 aa10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 TRIM29Q14134 588 aa10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 KIF1BPQ96EK5 621 aa10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 PIK3R4Q99570 1358 aa10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 LTKP29376 864 aa10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 AKAP17AQ02040 695 aaKnown RBP10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 PHAXQ9H814 394 aaKnown RBP10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 ZBTB40Q9NUA8 1239 aa10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 GOLGA6L19H0YKK7 550 aa10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 CLSTN1O94985 981 aa10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 RALYLQ86SE5 291 aaKnown RBP10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 FLT4P35916 1363 aa10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 HIP1O00291 1037 aa10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 ZBTB3Q9H5J0 574 aa10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 CCDC57Q2TAC2 916 aa10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 CCDC83Q8IWF9 413 aa10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 PUS7Q96PZ0 661 aaKnown RBP10.7□□□□□ -0.7
PDLIM5-222ENST00000615540 RAB11FIP3O75154 756 aa10.69□□□□□ -0.7
PDLIM5-222ENST00000615540 BMP2KLQ5H9B9 411 aa10.69□□□□□ -0.7
PDLIM5-222ENST00000615540 TSPY26PQ9H489 355 aa10.69□□□□□ -0.7
PDLIM5-222ENST00000615540 OTUD7AQ8TE49 926 aaPredicted RBP10.69□□□□□ -0.7
PDLIM5-222ENST00000615540 GRPEL1Q9HAV7 217 aa10.69□□□□□ -0.7
PDLIM5-222ENST00000615540 TMOD3Q9NYL9 352 aa10.69□□□□□ -0.7
PDLIM5-222ENST00000615540 ADAMTS2O95450 1211 aa10.69□□□□□ -0.7
PDLIM5-222ENST00000615540 CEP85Q6P2H3 762 aa10.69□□□□□ -0.7
PDLIM5-222ENST00000615540 GLI2P10070 1586 aa10.69□□□□□ -0.7
PDLIM5-222ENST00000615540 BECN2A8MW95 431 aa10.69□□□□□ -0.7
PDLIM5-222ENST00000615540 ZNF592Q92610 1267 aa10.69□□□□□ -0.7
PDLIM5-222ENST00000615540 PLEKHF1Q96S99 279 aa10.69□□□□□ -0.7
PDLIM5-222ENST00000615540 MAP3K5Q99683 1374 aa10.69□□□□□ -0.7
PDLIM5-222ENST00000615540 RNF17Q9BXT8 1623 aaKnown RBP10.68□□□□□ -0.7
PDLIM5-222ENST00000615540 CWC22Q9HCG8 908 aaKnown RBP10.68□□□□□ -0.7
PDLIM5-222ENST00000615540 VPS53Q5VIR6 699 aa10.68□□□□□ -0.7
PDLIM5-222ENST00000615540 ARHGAP45Q92619 1136 aa10.68□□□□□ -0.7
PDLIM5-222ENST00000615540 PA2G4Q9UQ80 394 aaKnown RBP10.68□□□□□ -0.7
PDLIM5-222ENST00000615540 DBF4Q9UBU7 674 aaPredicted RBP10.68□□□□□ -0.7
PDLIM5-222ENST00000615540 CLASP1Q7Z460 1538 aa10.68□□□□□ -0.7
PDLIM5-222ENST00000615540 ERICH2A1L162 156 aa10.68□□□□□ -0.7
PDLIM5-222ENST00000615540 ZBTB7BO15156 539 aaPredicted RBP10.68□□□□□ -0.7
PDLIM5-222ENST00000615540 SASS6Q6UVJ0 657 aa10.68□□□□□ -0.7
PDLIM5-222ENST00000615540 DDX11Q96FC9 970 aa10.67□□□□□ -0.7
PDLIM5-222ENST00000615540 MLH3Q9UHC1 1453 aa10.67□□□□□ -0.7
PDLIM5-222ENST00000615540 PPRC1Q5VV67 1664 aaKnown RBP10.67□□□□□ -0.7
PDLIM5-222ENST00000615540 PPFIA3O75145 1194 aa10.67□□□□□ -0.7
PDLIM5-222ENST00000615540 HYPKQ9NX55 129 aa10.67□□□□□ -0.7
PDLIM5-222ENST00000615540 MCM2P49736 904 aa10.67□□□□□ -0.7
PDLIM5-222ENST00000615540 LARP1Q6PKG0 1096 aaKnown RBP10.67□□□□□ -0.7
PDLIM5-222ENST00000615540 PES1O00541 588 aaKnown RBP10.67□□□□□ -0.7
PDLIM5-222ENST00000615540 GPTP24298 496 aa10.67□□□□□ -0.7
PDLIM5-222ENST00000615540 CWF19L2Q2TBE0 894 aaKnown RBP10.66□□□□□ -0.7
PDLIM5-222ENST00000615540 HSPA2P54652 639 aa10.66□□□□□ -0.7
PDLIM5-222ENST00000615540 ANKRD44Q8N8A2 993 aa10.66□□□□□ -0.7
PDLIM5-222ENST00000615540 TBC1D2BQ9UPU7 963 aa10.66□□□□□ -0.7
PDLIM5-222ENST00000615540 TMEM2Q9UHN6 1383 aa10.66□□□□□ -0.7
PDLIM5-222ENST00000615540 SPC24Q8NBT2 197 aa10.66□□□□□ -0.7
PDLIM5-222ENST00000615540 ORAI2Q96SN7 254 aa10.66□□□□□ -0.7
PDLIM5-222ENST00000615540 SYCE3A1L190 88 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms