RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 RTF1Q92541 710 aaKnown RBP13.61□□□□□ -0.23
SYNE1-240ENST00000610489 ACSBG1Q96GR2 724 aa13.61□□□□□ -0.23
SYNE1-240ENST00000610489 LGR6Q9HBX8 967 aa13.61□□□□□ -0.23
SYNE1-240ENST00000610489 ERVV-2B6SEH9 535 aa13.6□□□□□ -0.23
SYNE1-240ENST00000610489 LMOD3Q0VAK6 560 aa13.6□□□□□ -0.23
SYNE1-240ENST00000610489 SENP3-EIF4A1A0A087X0R7 540 aa13.6□□□□□ -0.23
SYNE1-240ENST00000610489 PRIM1P49642 420 aaKnown RBP13.6□□□□□ -0.23
SYNE1-240ENST00000610489 DCTN1Q14203 1278 aa13.6□□□□□ -0.23
SYNE1-240ENST00000610489 MCM10Q7L590 875 aa13.6□□□□□ -0.23
SYNE1-240ENST00000610489 TRIM35Q9UPQ4 493 aa13.6□□□□□ -0.23
SYNE1-240ENST00000610489 KCNQ2O43526 872 aa13.59□□□□□ -0.23
SYNE1-240ENST00000610489 SYTL4Q96C24 671 aaPredicted RBP13.59□□□□□ -0.23
SYNE1-240ENST00000610489 TRIM37O94972 964 aa13.58□□□□□ -0.23
SYNE1-240ENST00000610489 BCL11BQ9C0K0 894 aaPredicted RBP13.58□□□□□ -0.23
SYNE1-240ENST00000610489 PAPPAQ13219 1627 aa13.58□□□□□ -0.24
SYNE1-240ENST00000610489 CABP4P57796 275 aa13.58□□□□□ -0.24
SYNE1-240ENST00000610489 CCDC27Q2M243 656 aa13.58□□□□□ -0.24
SYNE1-240ENST00000610489 PTF1AQ7RTS3 328 aa13.58□□□□□ -0.24
SYNE1-240ENST00000610489 THUMPD2Q9BTF0 503 aaKnown RBP13.58□□□□□ -0.24
SYNE1-240ENST00000610489 SLC52A2Q9HAB3 445 aa13.58□□□□□ -0.24
SYNE1-240ENST00000610489 TMOD3Q9NYL9 352 aa13.58□□□□□ -0.24
SYNE1-240ENST00000610489 TEFQ10587 303 aa13.57□□□□□ -0.24
SYNE1-240ENST00000610489 NGEFQ8N5V2 710 aa13.57□□□□□ -0.24
SYNE1-240ENST00000610489 RGPD3A6NKT7 1758 aaPredicted RBP13.56□□□□□ -0.24
SYNE1-240ENST00000610489 KDM3BQ7LBC6 1761 aa13.56□□□□□ -0.24
SYNE1-240ENST00000610489 RGPD4Q7Z3J3 1758 aa13.56□□□□□ -0.24
SYNE1-240ENST00000610489 NFATC2IPQ8NCF5 419 aa13.56□□□□□ -0.24
SYNE1-240ENST00000610489 PIGBQ92521 554 aa13.56□□□□□ -0.24
SYNE1-240ENST00000610489 LY75O60449 1722 aa13.55□□□□□ -0.24
SYNE1-240ENST00000610489 UBR2Q8IWV8 1755 aa13.55□□□□□ -0.24
SYNE1-240ENST00000610489 FBXO3Q9UK99 471 aa13.55□□□□□ -0.24
SYNE1-240ENST00000610489 SALL2Q9Y467 1007 aaPredicted RBP13.55□□□□□ -0.24
SYNE1-240ENST00000610489 WWC1Q8IX03 1113 aa13.55□□□□□ -0.24
SYNE1-240ENST00000610489 TAF7Q15545 349 aaPredicted RBP13.53□□□□□ -0.24
SYNE1-240ENST00000610489 HNRNPUQ00839 825 aaKnown RBP eCLIP13.53□□□□□ -0.24
SYNE1-240ENST00000610489 CALD1Q05682 793 aaKnown RBP13.53□□□□□ -0.24
SYNE1-240ENST00000610489 CCDC125Q86Z20 511 aa13.53□□□□□ -0.24
SYNE1-240ENST00000610489 UPF1Q92900 1129 aaKnown RBP eCLIP13.53□□□□□ -0.24
SYNE1-240ENST00000610489 ZNF521Q96K83 1311 aa13.52□□□□□ -0.25
SYNE1-240ENST00000610489 BTBD11A6QL63 1104 aa13.52□□□□□ -0.25
SYNE1-240ENST00000610489 APBA3O96018 575 aa13.52□□□□□ -0.25
SYNE1-240ENST00000610489 ATG3Q9NT62 314 aa13.52□□□□□ -0.25
SYNE1-240ENST00000610489 ASAP1Q9ULH1 1129 aa13.52□□□□□ -0.25
SYNE1-240ENST00000610489 KCPQ6ZWJ8 1503 aa13.51□□□□□ -0.25
SYNE1-240ENST00000610489 SPDYE4A6NLX3 237 aa13.51□□□□□ -0.25
SYNE1-240ENST00000610489 SF3B2Q13435 895 aaKnown RBP13.51□□□□□ -0.25
SYNE1-240ENST00000610489 ZNF831Q5JPB2 1677 aa13.51□□□□□ -0.25
SYNE1-240ENST00000610489 PALLDQ8WX93 1383 aa13.51□□□□□ -0.25
SYNE1-240ENST00000610489 SLC39A6Q13433 755 aa13.5□□□□□ -0.25
SYNE1-240ENST00000610489 WDR63Q8IWG1 891 aa13.5□□□□□ -0.25
SYNE1-240ENST00000610489 SMARCC1Q92922 1105 aaPredicted RBP13.5□□□□□ -0.25
SYNE1-240ENST00000610489 RREB1Q92766 1687 aa13.5□□□□□ -0.25
SYNE1-240ENST00000610489 IL16Q14005 1332 aa13.5□□□□□ -0.25
SYNE1-240ENST00000610489 PLSCR1O15162 318 aa13.5□□□□□ -0.25
SYNE1-240ENST00000610489 ZNF790Q6PG37 636 aa13.5□□□□□ -0.25
SYNE1-240ENST00000610489 CFAP44Q96MT7 982 aa13.5□□□□□ -0.25
SYNE1-240ENST00000610489 IFT57Q9NWB7 429 aa13.5□□□□□ -0.25
SYNE1-240ENST00000610489 BABAM1Q9NWV8 329 aa13.5□□□□□ -0.25
SYNE1-240ENST00000610489 MIS18AQ9NYP9 233 aa13.5□□□□□ -0.25
SYNE1-240ENST00000610489 TAF1LQ8IZX4 1826 aa13.49□□□□□ -0.25
SYNE1-240ENST00000610489 CICQ96RK0 1608 aaPredicted RBP13.49□□□□□ -0.25
SYNE1-240ENST00000610489 ZNF853P0CG23 659 aa13.49□□□□□ -0.25
SYNE1-240ENST00000610489 BAG6P46379 1132 aa13.49□□□□□ -0.25
SYNE1-240ENST00000610489 TTC5Q8N0Z6 440 aa13.49□□□□□ -0.25
SYNE1-240ENST00000610489 TSPYL4Q9UJ04 414 aa13.49□□□□□ -0.25
SYNE1-240ENST00000610489 TJP1Q07157 1748 aa13.49□□□□□ -0.25
SYNE1-240ENST00000610489 CHL1O00533 1208 aa13.48□□□□□ -0.25
SYNE1-240ENST00000610489 GNAI1P63096 354 aa13.48□□□□□ -0.25
SYNE1-240ENST00000610489 LAS1LQ9Y4W2 734 aaKnown RBP13.48□□□□□ -0.25
SYNE1-240ENST00000610489 KCNQ3O43525 872 aa13.48□□□□□ -0.25
SYNE1-240ENST00000610489 COL5A3P25940 1745 aaPredicted RBP13.47□□□□□ -0.25
SYNE1-240ENST00000610489 C5P01031 1676 aa13.47□□□□□ -0.25
SYNE1-240ENST00000610489 ZBED9Q6R2W3 1325 aa13.47□□□□□ -0.25
SYNE1-240ENST00000610489 NUP188Q5SRE5 1749 aa13.47□□□□□ -0.25
SYNE1-240ENST00000610489 PLCB2Q00722 1185 aa13.47□□□□□ -0.25
SYNE1-240ENST00000610489 EN1Q05925 392 aaPredicted RBP13.47□□□□□ -0.25
SYNE1-240ENST00000610489 DEFB132Q7Z7B7 95 aa13.47□□□□□ -0.25
SYNE1-240ENST00000610489 MBIPQ9NS73 344 aa13.47□□□□□ -0.25
SYNE1-240ENST00000610489 LAMB4A4D0S4 1761 aa13.47□□□□□ -0.25
SYNE1-240ENST00000610489 LOC102724428A0A0B4J2F2 783 aa13.46□□□□□ -0.25
SYNE1-240ENST00000610489 PTCD1O75127 700 aaKnown RBP13.46□□□□□ -0.25
SYNE1-240ENST00000610489 SIK1P57059 783 aa13.46□□□□□ -0.25
SYNE1-240ENST00000610489 ZNF496Q96IT1 587 aaPredicted RBP13.46□□□□□ -0.25
SYNE1-240ENST00000610489 CAMKK2Q96RR4 588 aa13.46□□□□□ -0.25
SYNE1-240ENST00000610489 RBM42Q9BTD8 480 aaKnown RBP13.46□□□□□ -0.25
SYNE1-240ENST00000610489 GOLGA2Q08379 1002 aa13.45□□□□□ -0.26
SYNE1-240ENST00000610489 TXNRD1Q16881 649 aa13.45□□□□□ -0.26
SYNE1-240ENST00000610489 FMNL2Q96PY5 1086 aa13.45□□□□□ -0.26
SYNE1-240ENST00000610489 SLC4A9Q96Q91 983 aa13.45□□□□□ -0.26
SYNE1-240ENST00000610489 SPINK5Q9NQ38 1064 aaPredicted RBP13.45□□□□□ -0.26
SYNE1-240ENST00000610489 HEG1Q9ULI3 1381 aa13.45□□□□□ -0.26
SYNE1-240ENST00000610489 EIF4A1P60842 406 aaKnown RBP13.45□□□□□ -0.26
SYNE1-240ENST00000610489 EZH2Q15910 746 aaKnown RBP13.45□□□□□ -0.26
SYNE1-240ENST00000610489 PROM2Q8N271 834 aa13.45□□□□□ -0.26
SYNE1-240ENST00000610489 TSR2Q969E8 191 aaKnown RBP13.45□□□□□ -0.26
SYNE1-240ENST00000610489 CCNL1Q9UK58 526 aaPredicted RBP13.45□□□□□ -0.26
SYNE1-240ENST00000610489 FANCIQ9NVI1 1328 aa13.44□□□□□ -0.26
SYNE1-240ENST00000610489 SLC27A3Q5K4L6 730 aa13.44□□□□□ -0.26
SYNE1-240ENST00000610489 MYH14Q7Z406 1995 aaKnown RBP13.43□□□□□ -0.26
SYNE1-240ENST00000610489 E9PSI1 815 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms