RNA–Protein interactions for RNA: ENST00000601592.5

USE1-209, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 3

Gene USE1, Length 575 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-209ENST00000601592 ATG3Q9NT62 314 aa17.03■□□□□ 0.32
USE1-209ENST00000601592 QSER1Q2KHR3 1735 aa17.03■□□□□ 0.32
USE1-209ENST00000601592 C4BP0C0L5 1744 aa17.02■□□□□ 0.32
USE1-209ENST00000601592 GNAT3A8MTJ3 354 aa17.02■□□□□ 0.32
USE1-209ENST00000601592 RBM42Q9BTD8 480 aaKnown RBP17.02■□□□□ 0.32
USE1-209ENST00000601592 MAPK8IP3Q9UPT6 1336 aa17.01■□□□□ 0.31
USE1-209ENST00000601592 MRC1P22897 1456 aa17.01■□□□□ 0.31
USE1-209ENST00000601592 LRP5O75197 1615 aa17.01■□□□□ 0.31
USE1-209ENST00000601592 LOC102724428A0A0B4J2F2 783 aa17.01■□□□□ 0.31
USE1-209ENST00000601592 SIK1P57059 783 aa17.01■□□□□ 0.31
USE1-209ENST00000601592 WDR43Q15061 677 aaKnown RBP eCLIP17.01■□□□□ 0.31
USE1-209ENST00000601592 SLC52A2Q9HAB3 445 aa17.01■□□□□ 0.31
USE1-209ENST00000601592 SIPA1L3O60292 1781 aaPredicted RBP17.01■□□□□ 0.31
USE1-209ENST00000601592 ANP32CO43423 234 aa17■□□□□ 0.31
USE1-209ENST00000601592 TFCP2L1Q9NZI6 479 aa17■□□□□ 0.31
USE1-209ENST00000601592 ATP6V1AP38606 617 aa16.99■□□□□ 0.31
USE1-209ENST00000601592 TEFQ10587 303 aa16.99■□□□□ 0.31
USE1-209ENST00000601592 PDGFDQ9GZP0 370 aaPredicted RBP16.99■□□□□ 0.31
USE1-209ENST00000601592 PNNQ9H307 717 aaKnown RBP16.99■□□□□ 0.31
USE1-209ENST00000601592 ZNF831Q5JPB2 1677 aa16.98■□□□□ 0.31
USE1-209ENST00000601592 PTCD1O75127 700 aaKnown RBP16.98■□□□□ 0.31
USE1-209ENST00000601592 RTF1Q92541 710 aaKnown RBP16.98■□□□□ 0.31
USE1-209ENST00000601592 AKT1S1Q96B36 256 aa16.98■□□□□ 0.31
USE1-209ENST00000601592 UBR3Q6ZT12 1888 aa16.98■□□□□ 0.31
USE1-209ENST00000601592 COL5A3P25940 1745 aaPredicted RBP16.98■□□□□ 0.31
USE1-209ENST00000601592 HMGB2P26583 209 aaKnown RBP16.97■□□□□ 0.31
USE1-209ENST00000601592 AK7Q96M32 723 aa16.97■□□□□ 0.31
USE1-209ENST00000601592 TJP1Q07157 1748 aa16.96■□□□□ 0.31
USE1-209ENST00000601592 MSH5O43196 834 aa16.96■□□□□ 0.31
USE1-209ENST00000601592 ZBTB7AO95365 584 aa16.96■□□□□ 0.31
USE1-209ENST00000601592 SLC39A6Q13433 755 aa16.96■□□□□ 0.31
USE1-209ENST00000601592 LINC00116Q8NCU8 138 aa16.96■□□□□ 0.31
USE1-209ENST00000601592 IL17REQ8NFR9 667 aa16.96■□□□□ 0.31
USE1-209ENST00000601592 UBR2Q8IWV8 1755 aa16.96■□□□□ 0.31
USE1-209ENST00000601592 ITPK1Q13572 414 aa16.95■□□□□ 0.3
USE1-209ENST00000601592 MCM10Q7L590 875 aa16.95■□□□□ 0.3
USE1-209ENST00000601592 CCDC146Q8IYE0 955 aa16.95■□□□□ 0.3
USE1-209ENST00000601592 PLEKHF1Q96S99 279 aa16.95■□□□□ 0.3
USE1-209ENST00000601592 DCTN1Q14203 1278 aa16.94■□□□□ 0.3
USE1-209ENST00000601592 TTC5Q8N0Z6 440 aa16.94■□□□□ 0.3
USE1-209ENST00000601592 SPON1Q9HCB6 807 aa16.94■□□□□ 0.3
USE1-209ENST00000601592 PNPLA7Q6ZV29 1317 aa16.94■□□□□ 0.3
USE1-209ENST00000601592 CEMIPQ8WUJ3 1361 aa16.93■□□□□ 0.3
USE1-209ENST00000601592 PHF14O94880 888 aa16.93■□□□□ 0.3
USE1-209ENST00000601592 NFE2L2Q16236 605 aa16.93■□□□□ 0.3
USE1-209ENST00000601592 SLC4A9Q96Q91 983 aa16.93■□□□□ 0.3
USE1-209ENST00000601592 ATF5Q9Y2D1 282 aaPredicted RBP16.93■□□□□ 0.3
USE1-209ENST00000601592 MYH14Q7Z406 1995 aaKnown RBP16.93■□□□□ 0.3
USE1-209ENST00000601592 KCPQ6ZWJ8 1503 aa16.92■□□□□ 0.3
USE1-209ENST00000601592 GNPATO15228 680 aa16.92■□□□□ 0.3
USE1-209ENST00000601592 PPP1R1BQ9UD71 204 aaPredicted RBP16.92■□□□□ 0.3
USE1-209ENST00000601592 ADAMTS8Q9UP79 889 aa16.92■□□□□ 0.3
USE1-209ENST00000601592 CICQ96RK0 1608 aaPredicted RBP16.92■□□□□ 0.3
USE1-209ENST00000601592 BTBD11A6QL63 1104 aa16.9■□□□□ 0.3
USE1-209ENST00000601592 HTATSF1O43719 755 aaKnown RBP16.9■□□□□ 0.3
USE1-209ENST00000601592 CCDC184Q52MB2 194 aa16.9■□□□□ 0.3
USE1-209ENST00000601592 SMIM5Q71RC9 77 aa16.9■□□□□ 0.3
USE1-209ENST00000601592 MTFR1LQ9H019 292 aa16.9■□□□□ 0.3
USE1-209ENST00000601592 SRCAPQ6ZRS2 3230 aa16.9■□□□□ 0.3
USE1-209ENST00000601592 NEUROD2Q15784 382 aa16.89■□□□□ 0.29
USE1-209ENST00000601592 COL23A1Q86Y22 540 aaPredicted RBP16.89■□□□□ 0.29
USE1-209ENST00000601592 RUNDC1Q96C34 613 aa16.89■□□□□ 0.29
USE1-209ENST00000601592 MRS2Q9HD23 443 aa16.89■□□□□ 0.29
USE1-209ENST00000601592 RRP7AQ9Y3A4 280 aaKnown RBP16.89■□□□□ 0.29
USE1-209ENST00000601592 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.88■□□□□ 0.29
USE1-209ENST00000601592 RIPK4P57078 832 aa16.88■□□□□ 0.29
USE1-209ENST00000601592 ZNF790Q6PG37 636 aa16.88■□□□□ 0.29
USE1-209ENST00000601592 DNAJC10Q8IXB1 793 aa16.88■□□□□ 0.29
USE1-209ENST00000601592 FLAD1Q8NFF5 587 aa16.88■□□□□ 0.29
USE1-209ENST00000601592 THUMPD2Q9BTF0 503 aaKnown RBP16.88■□□□□ 0.29
USE1-209ENST00000601592 C4AP0C0L4 1744 aa16.87■□□□□ 0.29
USE1-209ENST00000601592 KDM3BQ7LBC6 1761 aa16.87■□□□□ 0.29
USE1-209ENST00000601592 TMPOP42166 694 aaKnown RBP16.87■□□□□ 0.29
USE1-209ENST00000601592 AMIGO3Q86WK7 504 aa16.87■□□□□ 0.29
USE1-209ENST00000601592 RTCBQ9Y3I0 505 aaKnown RBP16.87■□□□□ 0.29
USE1-209ENST00000601592 CNTNAP4Q9C0A0 1308 aa16.87■□□□□ 0.29
USE1-209ENST00000601592 KCNQ3O43525 872 aa16.86■□□□□ 0.29
USE1-209ENST00000601592 SSFA2P28290 1259 aa16.86■□□□□ 0.29
USE1-209ENST00000601592 CRKLP46109 303 aaKnown RBP16.86■□□□□ 0.29
USE1-209ENST00000601592 MSL1Q68DK7 614 aa16.86■□□□□ 0.29
USE1-209ENST00000601592 SLC16A10Q8TF71 515 aa16.86■□□□□ 0.29
USE1-209ENST00000601592 ZNF496Q96IT1 587 aaPredicted RBP16.86■□□□□ 0.29
USE1-209ENST00000601592 COL24A1Q17RW2 1714 aa16.85■□□□□ 0.29
USE1-209ENST00000601592 LMOD3Q0VAK6 560 aa16.85■□□□□ 0.29
USE1-209ENST00000601592 TAF7Q15545 349 aaPredicted RBP16.85■□□□□ 0.29
USE1-209ENST00000601592 RC3H1Q5TC82 1133 aaKnown RBP16.85■□□□□ 0.29
USE1-209ENST00000601592 FMNL2Q96PY5 1086 aa16.85■□□□□ 0.29
USE1-209ENST00000601592 HEG1Q9ULI3 1381 aa16.85■□□□□ 0.29
USE1-209ENST00000601592 PTGER2P43116 358 aa16.84■□□□□ 0.29
USE1-209ENST00000601592 MIS18AQ9NYP9 233 aa16.84■□□□□ 0.29
USE1-209ENST00000601592 POLD1P28340 1107 aa16.83■□□□□ 0.28
USE1-209ENST00000601592 VSIG10Q8N0Z9 540 aa16.83■□□□□ 0.28
USE1-209ENST00000601592 CCDC87Q9NVE4 849 aa16.83■□□□□ 0.28
USE1-209ENST00000601592 LAMB4A4D0S4 1761 aa16.82■□□□□ 0.28
USE1-209ENST00000601592 RPS6KA4O75676 772 aa16.82■□□□□ 0.28
USE1-209ENST00000601592 STARD3NLO95772 234 aa16.82■□□□□ 0.28
USE1-209ENST00000601592 CYP19A1P11511 503 aaPredicted RBP16.82■□□□□ 0.28
USE1-209ENST00000601592 TRAPPC3LQ5T215 181 aa16.82■□□□□ 0.28
USE1-209ENST00000601592 APAF1O14727 1248 aa16.81■□□□□ 0.28
USE1-209ENST00000601592 RFC4P35249 363 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms