RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 LGR6Q9HBX8 967 aa22.45■■□□□ 1.18
TRIM28-215ENST00000601150 ZNF831Q5JPB2 1677 aa22.45■■□□□ 1.18
TRIM28-215ENST00000601150 GNAT3A8MTJ3 354 aa22.44■■□□□ 1.18
TRIM28-215ENST00000601150 ZNF827Q17R98 1081 aa22.44■■□□□ 1.18
TRIM28-215ENST00000601150 NFATC2IPQ8NCF5 419 aa22.44■■□□□ 1.18
TRIM28-215ENST00000601150 AKT1S1Q96B36 256 aa22.44■■□□□ 1.18
TRIM28-215ENST00000601150 SLC52A2Q9HAB3 445 aa22.43■■□□□ 1.18
TRIM28-215ENST00000601150 LOC102724428A0A0B4J2F2 783 aa22.42■■□□□ 1.18
TRIM28-215ENST00000601150 SIK1P57059 783 aa22.42■■□□□ 1.18
TRIM28-215ENST00000601150 C4BP0C0L5 1744 aa22.42■■□□□ 1.18
TRIM28-215ENST00000601150 SIPA1L3O60292 1781 aaPredicted RBP22.41■■□□□ 1.18
TRIM28-215ENST00000601150 NEFMP07197 916 aa22.41■■□□□ 1.18
TRIM28-215ENST00000601150 PNNQ9H307 717 aaKnown RBP22.41■■□□□ 1.18
TRIM28-215ENST00000601150 DLG5Q8TDM6 1919 aa22.41■■□□□ 1.18
TRIM28-215ENST00000601150 IL17REQ8NFR9 667 aa22.38■■□□□ 1.17
TRIM28-215ENST00000601150 PLEKHF1Q96S99 279 aa22.38■■□□□ 1.17
TRIM28-215ENST00000601150 PDGFDQ9GZP0 370 aaPredicted RBP22.38■■□□□ 1.17
TRIM28-215ENST00000601150 TFCP2L1Q9NZI6 479 aa22.38■■□□□ 1.17
TRIM28-215ENST00000601150 COL5A3P25940 1745 aaPredicted RBP22.37■■□□□ 1.17
TRIM28-215ENST00000601150 ATP6V1AP38606 617 aa22.37■■□□□ 1.17
TRIM28-215ENST00000601150 RBM42Q9BTD8 480 aaKnown RBP22.37■■□□□ 1.17
TRIM28-215ENST00000601150 TEFQ10587 303 aa22.36■■□□□ 1.17
TRIM28-215ENST00000601150 UBR3Q6ZT12 1888 aa22.36■■□□□ 1.17
TRIM28-215ENST00000601150 UBR2Q8IWV8 1755 aa22.35■■□□□ 1.17
TRIM28-215ENST00000601150 CICQ96RK0 1608 aaPredicted RBP22.35■■□□□ 1.17
TRIM28-215ENST00000601150 MAPK8IP3Q9UPT6 1336 aa22.35■■□□□ 1.17
TRIM28-215ENST00000601150 ITPK1Q13572 414 aa22.35■■□□□ 1.17
TRIM28-215ENST00000601150 WDR43Q15061 677 aaKnown RBP eCLIP22.35■■□□□ 1.172e-6■■□□□ 11.4
TRIM28-215ENST00000601150 RTF1Q92541 710 aaKnown RBP22.35■■□□□ 1.17
TRIM28-215ENST00000601150 SPON1Q9HCB6 807 aa22.35■■□□□ 1.17
TRIM28-215ENST00000601150 CEMIPQ8WUJ3 1361 aa22.35■■□□□ 1.17
TRIM28-215ENST00000601150 PNPLA7Q6ZV29 1317 aa22.34■■□□□ 1.17
TRIM28-215ENST00000601150 HTATSF1O43719 755 aaKnown RBP22.34■■□□□ 1.17
TRIM28-215ENST00000601150 PTCD1O75127 700 aaKnown RBP22.34■■□□□ 1.17
TRIM28-215ENST00000601150 LINC00116Q8NCU8 138 aa22.34■■□□□ 1.17
TRIM28-215ENST00000601150 SLC4A9Q96Q91 983 aa22.34■■□□□ 1.17
TRIM28-215ENST00000601150 TJP1Q07157 1748 aa22.34■■□□□ 1.17
TRIM28-215ENST00000601150 AK7Q96M32 723 aa22.33■■□□□ 1.17
TRIM28-215ENST00000601150 ANP32CO43423 234 aa22.32■■□□□ 1.16
TRIM28-215ENST00000601150 ZBTB7AO95365 584 aa22.32■■□□□ 1.16
TRIM28-215ENST00000601150 KCPQ6ZWJ8 1503 aa22.31■■□□□ 1.16
TRIM28-215ENST00000601150 SLC39A6Q13433 755 aa22.31■■□□□ 1.16
TRIM28-215ENST00000601150 NFE2L2Q16236 605 aa22.31■■□□□ 1.16
TRIM28-215ENST00000601150 MTFR1LQ9H019 292 aa22.31■■□□□ 1.16
TRIM28-215ENST00000601150 MCM10Q7L590 875 aa22.3■■□□□ 1.16
TRIM28-215ENST00000601150 FLAD1Q8NFF5 587 aa22.3■■□□□ 1.16
TRIM28-215ENST00000601150 SLC16A10Q8TF71 515 aa22.3■■□□□ 1.16
TRIM28-215ENST00000601150 ATF5Q9Y2D1 282 aaPredicted RBP22.29■■□□□ 1.16
TRIM28-215ENST00000601150 COL24A1Q17RW2 1714 aa22.28■■□□□ 1.16
TRIM28-215ENST00000601150 MSH5O43196 834 aa22.28■■□□□ 1.16
TRIM28-215ENST00000601150 COL23A1Q86Y22 540 aaPredicted RBP22.28■■□□□ 1.16
TRIM28-215ENST00000601150 TTC5Q8N0Z6 440 aa22.28■■□□□ 1.16
TRIM28-215ENST00000601150 MYH14Q7Z406 1995 aaKnown RBP22.28■■□□□ 1.16
TRIM28-215ENST00000601150 GNPATO15228 680 aa22.27■■□□□ 1.16
TRIM28-215ENST00000601150 DCTN1Q14203 1278 aa22.27■■□□□ 1.16
TRIM28-215ENST00000601150 RC3H1Q5TC82 1133 aaKnown RBP22.27■■□□□ 1.16
TRIM28-215ENST00000601150 ADAMTS8Q9UP79 889 aa22.27■■□□□ 1.16
TRIM28-215ENST00000601150 CNTNAP4Q9C0A0 1308 aa22.27■■□□□ 1.16
TRIM28-215ENST00000601150 ZNF790Q6PG37 636 aa22.26■■□□□ 1.15
TRIM28-215ENST00000601150 BTBD11A6QL63 1104 aa22.25■■□□□ 1.15
TRIM28-215ENST00000601150 SSFA2P28290 1259 aa22.25■■□□□ 1.15
TRIM28-215ENST00000601150 CCDC146Q8IYE0 955 aa22.25■■□□□ 1.15
TRIM28-215ENST00000601150 RUNDC1Q96C34 613 aa22.25■■□□□ 1.15
TRIM28-215ENST00000601150 PPP1R1BQ9UD71 204 aaPredicted RBP22.25■■□□□ 1.15
TRIM28-215ENST00000601150 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.24■■□□□ 1.15
TRIM28-215ENST00000601150 PHF14O94880 888 aa22.24■■□□□ 1.15
TRIM28-215ENST00000601150 PTGER2P43116 358 aa22.24■■□□□ 1.15
TRIM28-215ENST00000601150 AMIGO3Q86WK7 504 aa22.24■■□□□ 1.15
TRIM28-215ENST00000601150 VSIG10Q8N0Z9 540 aa22.24■■□□□ 1.15
TRIM28-215ENST00000601150 DNAJC10Q8IXB1 793 aa22.23■■□□□ 1.15
TRIM28-215ENST00000601150 RTCBQ9Y3I0 505 aaKnown RBP22.23■■□□□ 1.15
TRIM28-215ENST00000601150 TMPOP42166 694 aaKnown RBP22.22■■□□□ 1.15
TRIM28-215ENST00000601150 CRKLP46109 303 aaKnown RBP22.22■■□□□ 1.15
TRIM28-215ENST00000601150 RIPK4P57078 832 aa22.22■■□□□ 1.15
TRIM28-215ENST00000601150 CCDC184Q52MB2 194 aa22.22■■□□□ 1.15
TRIM28-215ENST00000601150 SMIM5Q71RC9 77 aa22.22■■□□□ 1.15
TRIM28-215ENST00000601150 ZNF496Q96IT1 587 aaPredicted RBP22.22■■□□□ 1.15
TRIM28-215ENST00000601150 SRCAPQ6ZRS2 3230 aa22.22■■□□□ 1.15
TRIM28-215ENST00000601150 KDM3BQ7LBC6 1761 aa22.21■■□□□ 1.15
TRIM28-215ENST00000601150 RPS6KA4O75676 772 aa22.21■■□□□ 1.15
TRIM28-215ENST00000601150 TAF7Q15545 349 aaPredicted RBP22.21■■□□□ 1.15
TRIM28-215ENST00000601150 SGIP1Q9BQI5 828 aa22.21■■□□□ 1.15
TRIM28-215ENST00000601150 HEG1Q9ULI3 1381 aa22.21■■□□□ 1.15
TRIM28-215ENST00000601150 C4AP0C0L4 1744 aa22.2■■□□□ 1.14
TRIM28-215ENST00000601150 LMOD3Q0VAK6 560 aa22.2■■□□□ 1.14
TRIM28-215ENST00000601150 FMNL2Q96PY5 1086 aa22.2■■□□□ 1.14
TRIM28-215ENST00000601150 KCNQ3O43525 872 aa22.19■■□□□ 1.14
TRIM28-215ENST00000601150 CYP19A1P11511 503 aaPredicted RBP22.19■■□□□ 1.14
TRIM28-215ENST00000601150 ADRA2BP18089 450 aa22.19■■□□□ 1.14
TRIM28-215ENST00000601150 THUMPD2Q9BTF0 503 aaKnown RBP22.19■■□□□ 1.14
TRIM28-215ENST00000601150 MRS2Q9HD23 443 aa22.19■■□□□ 1.14
TRIM28-215ENST00000601150 POLD1P28340 1107 aa22.18■■□□□ 1.14
TRIM28-215ENST00000601150 TRAPPC3LQ5T215 181 aa22.18■■□□□ 1.14
TRIM28-215ENST00000601150 INTS5Q6P9B9 1019 aaKnown RBP22.18■■□□□ 1.14
TRIM28-215ENST00000601150 PNISRQ8TF01 805 aaKnown RBP22.18■■□□□ 1.14
TRIM28-215ENST00000601150 CCDC87Q9NVE4 849 aa22.18■■□□□ 1.14
TRIM28-215ENST00000601150 RRP7AQ9Y3A4 280 aaKnown RBP22.18■■□□□ 1.14
TRIM28-215ENST00000601150 STARD3NLO95772 234 aa22.17■■□□□ 1.14
TRIM28-215ENST00000601150 TEX13AQ9BXU3 409 aaPredicted RBP22.17■■□□□ 1.14
TRIM28-215ENST00000601150 NEUROD2Q15784 382 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms