RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 E9PSI1 815 aa18.71■□□□□ 0.59
UPF1-211ENST00000600868 CHL1O00533 1208 aa18.71■□□□□ 0.59
UPF1-211ENST00000600868 FAM182BQ5T319 152 aa18.71■□□□□ 0.59
UPF1-211ENST00000600868 ITGB4P16144 1822 aa18.71■□□□□ 0.59
UPF1-211ENST00000600868 PRIM1P49642 420 aaKnown RBP18.7■□□□□ 0.58
UPF1-211ENST00000600868 SLFN5Q08AF3 891 aa18.7■□□□□ 0.58
UPF1-211ENST00000600868 SPINK5Q9NQ38 1064 aaPredicted RBP18.7■□□□□ 0.58
UPF1-211ENST00000600868 TMOD3Q9NYL9 352 aa18.7■□□□□ 0.58
UPF1-211ENST00000600868 TRMT2AQ8IZ69 625 aaKnown RBP18.69■□□□□ 0.58
UPF1-211ENST00000600868 CDCA7LQ96GN5 454 aa18.69■□□□□ 0.58
UPF1-211ENST00000600868 ACSBG1Q96GR2 724 aa18.69■□□□□ 0.58
UPF1-211ENST00000600868 MYH16Q9H6N6 1097 aa18.69■□□□□ 0.58
UPF1-211ENST00000600868 SBF2Q86WG5 1849 aa18.68■□□□□ 0.58
UPF1-211ENST00000600868 BTBD11A6QL63 1104 aa18.68■□□□□ 0.58
UPF1-211ENST00000600868 PIGBQ92521 554 aa18.68■□□□□ 0.58
UPF1-211ENST00000600868 SYTL4Q96C24 671 aaPredicted RBP18.68■□□□□ 0.58
UPF1-211ENST00000600868 LAS1LQ9Y4W2 734 aaKnown RBP18.68■□□□□ 0.58
UPF1-211ENST00000600868 NHSQ6T4R5 1651 aa18.67■□□□□ 0.58
UPF1-211ENST00000600868 MBIPQ9NS73 344 aa18.67■□□□□ 0.58
UPF1-211ENST00000600868 TSPYL4Q9UJ04 414 aa18.67■□□□□ 0.58
UPF1-211ENST00000600868 KAT6BQ8WYB5 2073 aa18.67■□□□□ 0.58
UPF1-211ENST00000600868 KCNQ2O43526 872 aa18.66■□□□□ 0.58
UPF1-211ENST00000600868 MIS18AQ9NYP9 233 aa18.66■□□□□ 0.58
UPF1-211ENST00000600868 KDM3BQ7LBC6 1761 aa18.65■□□□□ 0.58
UPF1-211ENST00000600868 DUSP27Q5VZP5 1158 aa18.65■□□□□ 0.58
UPF1-211ENST00000600868 ZNF790Q6PG37 636 aa18.65■□□□□ 0.58
UPF1-211ENST00000600868 BCL11BQ9C0K0 894 aaPredicted RBP18.65■□□□□ 0.58
UPF1-211ENST00000600868 FANCIQ9NVI1 1328 aa18.65■□□□□ 0.58
UPF1-211ENST00000600868 PAPPAQ13219 1627 aa18.64■□□□□ 0.57
UPF1-211ENST00000600868 TSR2Q969E8 191 aaKnown RBP18.64■□□□□ 0.57
UPF1-211ENST00000600868 SLC39A6Q13433 755 aa18.63■□□□□ 0.57
UPF1-211ENST00000600868 ATG3Q9NT62 314 aa18.63■□□□□ 0.57
UPF1-211ENST00000600868 KCNQ3O43525 872 aa18.62■□□□□ 0.57
UPF1-211ENST00000600868 TTC5Q8N0Z6 440 aa18.62■□□□□ 0.57
UPF1-211ENST00000600868 ASAP1Q9ULH1 1129 aa18.62■□□□□ 0.57
UPF1-211ENST00000600868 TRIM37O94972 964 aa18.61■□□□□ 0.57
UPF1-211ENST00000600868 EIF4A1P60842 406 aaKnown RBP18.61■□□□□ 0.57
UPF1-211ENST00000600868 PTF1AQ7RTS3 328 aa18.61■□□□□ 0.57
UPF1-211ENST00000600868 SMARCC1Q92922 1105 aaPredicted RBP18.61■□□□□ 0.57
UPF1-211ENST00000600868 BTAF1O14981 1849 aa18.6■□□□□ 0.57
UPF1-211ENST00000600868 UBR2Q8IWV8 1755 aa18.6■□□□□ 0.57
UPF1-211ENST00000600868 HEG1Q9ULI3 1381 aa18.59■□□□□ 0.57
UPF1-211ENST00000600868 FMNL2Q96PY5 1086 aa18.59■□□□□ 0.57
UPF1-211ENST00000600868 KCPQ6ZWJ8 1503 aa18.59■□□□□ 0.57
UPF1-211ENST00000600868 EXOSC9Q06265 439 aaKnown RBP18.58■□□□□ 0.56
UPF1-211ENST00000600868 ZNF496Q96IT1 587 aaPredicted RBP18.58■□□□□ 0.56
UPF1-211ENST00000600868 SOS1Q07889 1333 aaPredicted RBP18.57■□□□□ 0.56
UPF1-211ENST00000600868 C8orf58Q8NAV2 365 aa18.57■□□□□ 0.56
UPF1-211ENST00000600868 PALLDQ8WX93 1383 aa18.56■□□□□ 0.56
UPF1-211ENST00000600868 HOXB7P09629 217 aa18.56■□□□□ 0.56
UPF1-211ENST00000600868 CT47B1P0C2W7 299 aaPredicted RBP18.56■□□□□ 0.56
UPF1-211ENST00000600868 EP400Q96L91 3159 aa18.55■□□□□ 0.56
UPF1-211ENST00000600868 PTCD1O75127 700 aaKnown RBP18.55■□□□□ 0.56
UPF1-211ENST00000600868 GIGYF1O75420 1035 aaPredicted RBP18.55■□□□□ 0.56
UPF1-211ENST00000600868 KRT24Q2M2I5 525 aa18.55■□□□□ 0.56
UPF1-211ENST00000600868 VSIG10Q8N0Z9 540 aa18.55■□□□□ 0.56
UPF1-211ENST00000600868 SNRPA1P09661 255 aaKnown RBP18.54■□□□□ 0.56
UPF1-211ENST00000600868 TSPYL6Q8N831 410 aa18.54■□□□□ 0.56
UPF1-211ENST00000600868 TNS1Q9HBL0 1735 aaKnown RBP18.54■□□□□ 0.56
UPF1-211ENST00000600868 LOC102724428A0A0B4J2F2 783 aa18.53■□□□□ 0.56
UPF1-211ENST00000600868 VAMP4O75379 141 aa18.53■□□□□ 0.56
UPF1-211ENST00000600868 SIK1P57059 783 aa18.53■□□□□ 0.56
UPF1-211ENST00000600868 TWISTNBQ3B726 338 aaPredicted RBP18.53■□□□□ 0.56
UPF1-211ENST00000600868 RBM42Q9BTD8 480 aaKnown RBP18.53■□□□□ 0.56
UPF1-211ENST00000600868 ZNF831Q5JPB2 1677 aa18.53■□□□□ 0.56
UPF1-211ENST00000600868 LY75O60449 1722 aa18.52■□□□□ 0.56
UPF1-211ENST00000600868 PLSCR1O15162 318 aa18.52■□□□□ 0.56
UPF1-211ENST00000600868 SLC4A9Q96Q91 983 aa18.52■□□□□ 0.56
UPF1-211ENST00000600868 TEX13AQ9BXU3 409 aaPredicted RBP18.52■□□□□ 0.56
UPF1-211ENST00000600868 ELL2O00472 640 aaPredicted RBP18.51■□□□□ 0.55
UPF1-211ENST00000600868 APBA3O96018 575 aa18.51■□□□□ 0.55
UPF1-211ENST00000600868 CCDC125Q86Z20 511 aa18.51■□□□□ 0.55
UPF1-211ENST00000600868 ZNF428Q96B54 188 aa18.51■□□□□ 0.55
UPF1-211ENST00000600868 CHMP4AQ9BY43 222 aa18.51■□□□□ 0.55
UPF1-211ENST00000600868 CICQ96RK0 1608 aaPredicted RBP18.51■□□□□ 0.55
UPF1-211ENST00000600868 C5P01031 1676 aa18.5■□□□□ 0.55
UPF1-211ENST00000600868 PRAMEF22A3QJZ6 481 aa18.49■□□□□ 0.55
UPF1-211ENST00000600868 ATP6V1AP38606 617 aa18.49■□□□□ 0.55
UPF1-211ENST00000600868 RGPD3A6NKT7 1758 aaPredicted RBP18.49■□□□□ 0.55
UPF1-211ENST00000600868 RGPD4Q7Z3J3 1758 aa18.49■□□□□ 0.55
UPF1-211ENST00000600868 LAMB4A4D0S4 1761 aa18.48■□□□□ 0.55
UPF1-211ENST00000600868 SF3B2Q13435 895 aaKnown RBP18.48■□□□□ 0.55
UPF1-211ENST00000600868 DNAJC10Q8IXB1 793 aa18.48■□□□□ 0.55
UPF1-211ENST00000600868 USP16Q9Y5T5 823 aa18.48■□□□□ 0.55
UPF1-211ENST00000600868 TJP1Q07157 1748 aa18.48■□□□□ 0.55
UPF1-211ENST00000600868 STARD3NLO95772 234 aa18.47■□□□□ 0.55
UPF1-211ENST00000600868 ITPK1Q13572 414 aa18.47■□□□□ 0.55
UPF1-211ENST00000600868 SLC27A3Q5K4L6 730 aa18.47■□□□□ 0.55
UPF1-211ENST00000600868 HDGFL1Q5TGJ6 251 aa18.47■□□□□ 0.55
UPF1-211ENST00000600868 CCDC30Q5VVM6 783 aa18.47■□□□□ 0.55
UPF1-211ENST00000600868 CCNL1Q9UK58 526 aaPredicted RBP18.47■□□□□ 0.55
UPF1-211ENST00000600868 CENPBP07199 599 aaPredicted RBP18.46■□□□□ 0.55
UPF1-211ENST00000600868 EIF2S2P20042 333 aaKnown RBP18.46■□□□□ 0.55
UPF1-211ENST00000600868 HMGB2P26583 209 aaKnown RBP18.46■□□□□ 0.55
UPF1-211ENST00000600868 ALDH1L2Q3SY69 923 aa18.46■□□□□ 0.55
UPF1-211ENST00000600868 CYP19A1P11511 503 aaPredicted RBP18.45■□□□□ 0.54
UPF1-211ENST00000600868 BAG6P46379 1132 aa18.45■□□□□ 0.54
UPF1-211ENST00000600868 RARSP54136 660 aaKnown RBP18.45■□□□□ 0.54
UPF1-211ENST00000600868 TXNRD1Q16881 649 aa18.45■□□□□ 0.54
UPF1-211ENST00000600868 ILDR2Q71H61 639 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms