RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 SCN11AQ9UI33 1791 aa21.76■■□□□ 1.07
SHKBP1-219ENST00000599575 CCDC27Q2M243 656 aa21.75■■□□□ 1.07
SHKBP1-219ENST00000599575 CALD1Q05682 793 aaKnown RBP21.74■■□□□ 1.07
SHKBP1-219ENST00000599575 BABAM1Q9NWV8 329 aa21.74■■□□□ 1.07
SHKBP1-219ENST00000599575 EN1Q05925 392 aaPredicted RBP21.73■■□□□ 1.07
SHKBP1-219ENST00000599575 MCM10Q7L590 875 aa21.73■■□□□ 1.07
SHKBP1-219ENST00000599575 PALLDQ8WX93 1383 aa21.73■■□□□ 1.07
SHKBP1-219ENST00000599575 BTAF1O14981 1849 aa21.72■■□□□ 1.07
SHKBP1-219ENST00000599575 TAF7Q15545 349 aaPredicted RBP21.72■■□□□ 1.07
SHKBP1-219ENST00000599575 DEFB132Q7Z7B7 95 aa21.72■■□□□ 1.07
SHKBP1-219ENST00000599575 ATG3Q9NT62 314 aa21.72■■□□□ 1.07
SHKBP1-219ENST00000599575 NEUROD2Q15784 382 aa21.71■■□□□ 1.07
SHKBP1-219ENST00000599575 TXNRD1Q16881 649 aa21.71■■□□□ 1.07
SHKBP1-219ENST00000599575 TRIM35Q9UPQ4 493 aa21.71■■□□□ 1.07
SHKBP1-219ENST00000599575 ITGB4P16144 1822 aa21.71■■□□□ 1.07
SHKBP1-219ENST00000599575 ASAP1Q9ULH1 1129 aa21.7■■□□□ 1.06
SHKBP1-219ENST00000599575 RRP7AQ9Y3A4 280 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-219ENST00000599575 BTBD11A6QL63 1104 aa21.69■■□□□ 1.06
SHKBP1-219ENST00000599575 DCTN1Q14203 1278 aa21.69■■□□□ 1.06
SHKBP1-219ENST00000599575 EZH2Q15910 746 aaKnown RBP21.69■■□□□ 1.06
SHKBP1-219ENST00000599575 TTC5Q8N0Z6 440 aa21.69■■□□□ 1.06
SHKBP1-219ENST00000599575 ZNF790Q6PG37 636 aa21.68■■□□□ 1.06
SHKBP1-219ENST00000599575 KAT6BQ8WYB5 2073 aa21.67■■□□□ 1.06
SHKBP1-219ENST00000599575 LOC102724428A0A0B4J2F2 783 aa21.67■■□□□ 1.06
SHKBP1-219ENST00000599575 SIK1P57059 783 aa21.67■■□□□ 1.06
SHKBP1-219ENST00000599575 VSIG10Q8N0Z9 540 aa21.67■■□□□ 1.06
SHKBP1-219ENST00000599575 PROM2Q8N271 834 aa21.67■■□□□ 1.06
SHKBP1-219ENST00000599575 CCNL1Q9UK58 526 aaPredicted RBP21.66■■□□□ 1.06
SHKBP1-219ENST00000599575 DLG5Q8TDM6 1919 aa21.65■■□□□ 1.06
SHKBP1-219ENST00000599575 NBPF14Q5TI25 921 aa21.64■■□□□ 1.05
SHKBP1-219ENST00000599575 WWC1Q8IX03 1113 aa21.64■■□□□ 1.05
SHKBP1-219ENST00000599575 LY75O60449 1722 aa21.63■■□□□ 1.05
SHKBP1-219ENST00000599575 ZNF831Q5JPB2 1677 aa21.63■■□□□ 1.05
SHKBP1-219ENST00000599575 IL16Q14005 1332 aa21.63■■□□□ 1.05
SHKBP1-219ENST00000599575 WDR63Q8IWG1 891 aa21.63■■□□□ 1.05
SHKBP1-219ENST00000599575 CFAP44Q96MT7 982 aa21.63■■□□□ 1.05
SHKBP1-219ENST00000599575 FMNL2Q96PY5 1086 aa21.63■■□□□ 1.05
SHKBP1-219ENST00000599575 TEX13AQ9BXU3 409 aaPredicted RBP21.63■■□□□ 1.05
SHKBP1-219ENST00000599575 SIPA1L3O60292 1781 aaPredicted RBP21.63■■□□□ 1.05
SHKBP1-219ENST00000599575 CHL1O00533 1208 aa21.62■■□□□ 1.05
SHKBP1-219ENST00000599575 THUMPD2Q9BTF0 503 aaKnown RBP21.62■■□□□ 1.05
SHKBP1-219ENST00000599575 PAPPAQ13219 1627 aa21.62■■□□□ 1.05
SHKBP1-219ENST00000599575 RREB1Q92766 1687 aa21.61■■□□□ 1.05
SHKBP1-219ENST00000599575 PTCD1O75127 700 aaKnown RBP21.61■■□□□ 1.05
SHKBP1-219ENST00000599575 ATP6V1AP38606 617 aa21.61■■□□□ 1.05
SHKBP1-219ENST00000599575 GNAI1P63096 354 aa21.61■■□□□ 1.05
SHKBP1-219ENST00000599575 SLC39A6Q13433 755 aa21.61■■□□□ 1.05
SHKBP1-219ENST00000599575 RBM42Q9BTD8 480 aaKnown RBP21.61■■□□□ 1.05
SHKBP1-219ENST00000599575 LRRC4BQ9NT99 713 aa21.61■■□□□ 1.05
SHKBP1-219ENST00000599575 IFT57Q9NWB7 429 aa21.61■■□□□ 1.05
SHKBP1-219ENST00000599575 VIRMAQ69YN4 1812 aaKnown RBP21.6■■□□□ 1.05
SHKBP1-219ENST00000599575 TSPYL4Q9UJ04 414 aa21.6■■□□□ 1.05
SHKBP1-219ENST00000599575 ZNF853P0CG23 659 aa21.59■■□□□ 1.05
SHKBP1-219ENST00000599575 KCPQ6ZWJ8 1503 aa21.59■■□□□ 1.05
SHKBP1-219ENST00000599575 ZNF496Q96IT1 587 aaPredicted RBP21.58■■□□□ 1.05
SHKBP1-219ENST00000599575 HEG1Q9ULI3 1381 aa21.58■■□□□ 1.04
SHKBP1-219ENST00000599575 CICQ96RK0 1608 aaPredicted RBP21.58■■□□□ 1.04
SHKBP1-219ENST00000599575 RC3H1Q5TC82 1133 aaKnown RBP21.57■■□□□ 1.04
SHKBP1-219ENST00000599575 STK32BQ9NY57 414 aa21.57■■□□□ 1.04
SHKBP1-219ENST00000599575 SNRPA1P09661 255 aaKnown RBP21.56■■□□□ 1.04
SHKBP1-219ENST00000599575 SLC4A9Q96Q91 983 aa21.56■■□□□ 1.04
SHKBP1-219ENST00000599575 UBR2Q8IWV8 1755 aa21.56■■□□□ 1.04
SHKBP1-219ENST00000599575 STARD3NLO95772 234 aa21.55■■□□□ 1.04
SHKBP1-219ENST00000599575 EIF4A1P60842 406 aaKnown RBP21.55■■□□□ 1.04
SHKBP1-219ENST00000599575 SLC15A2Q16348 729 aa21.55■■□□□ 1.04
SHKBP1-219ENST00000599575 NUP188Q5SRE5 1749 aa21.55■■□□□ 1.04
SHKBP1-219ENST00000599575 ZNF521Q96K83 1311 aa21.55■■□□□ 1.04
SHKBP1-219ENST00000599575 CNTNAP4Q9C0A0 1308 aa21.55■■□□□ 1.04
SHKBP1-219ENST00000599575 ITPK1Q13572 414 aa21.54■■□□□ 1.04
SHKBP1-219ENST00000599575 AKT1S1Q96B36 256 aa21.54■■□□□ 1.04
SHKBP1-219ENST00000599575 CHMP4AQ9BY43 222 aa21.54■■□□□ 1.04
SHKBP1-219ENST00000599575 MIS18AQ9NYP9 233 aa21.54■■□□□ 1.04
SHKBP1-219ENST00000599575 FLAD1Q8NFF5 587 aa21.53■■□□□ 1.04
SHKBP1-219ENST00000599575 SOS1Q07889 1333 aaPredicted RBP21.53■■□□□ 1.04
SHKBP1-219ENST00000599575 KDM3BQ7LBC6 1761 aa21.52■■□□□ 1.04
SHKBP1-219ENST00000599575 KCNQ3O43525 872 aa21.52■■□□□ 1.04
SHKBP1-219ENST00000599575 HOXB7P09629 217 aa21.52■■□□□ 1.04
SHKBP1-219ENST00000599575 LINC00116Q8NCU8 138 aa21.52■■□□□ 1.04
SHKBP1-219ENST00000599575 LAS1LQ9Y4W2 734 aaKnown RBP21.52■■□□□ 1.04
SHKBP1-219ENST00000599575 C5P01031 1676 aa21.52■■□□□ 1.04
SHKBP1-219ENST00000599575 GIGYF1O75420 1035 aaPredicted RBP21.51■■□□□ 1.03
SHKBP1-219ENST00000599575 KCNQ4P56696 695 aa21.51■■□□□ 1.03
SHKBP1-219ENST00000599575 AK7Q96M32 723 aa21.51■■□□□ 1.03
SHKBP1-219ENST00000599575 MYH16Q9H6N6 1097 aa21.51■■□□□ 1.03
SHKBP1-219ENST00000599575 MBIPQ9NS73 344 aa21.51■■□□□ 1.03
SHKBP1-219ENST00000599575 SALL2Q9Y467 1007 aaPredicted RBP21.51■■□□□ 1.03
SHKBP1-219ENST00000599575 CYP19A1P11511 503 aaPredicted RBP21.5■■□□□ 1.03
SHKBP1-219ENST00000599575 DNAJC10Q8IXB1 793 aa21.5■■□□□ 1.03
SHKBP1-219ENST00000599575 TFCP2L1Q9NZI6 479 aa21.5■■□□□ 1.03
SHKBP1-219ENST00000599575 ADRA2BP18089 450 aa21.49■■□□□ 1.03
SHKBP1-219ENST00000599575 GOLGA2Q08379 1002 aa21.49■■□□□ 1.03
SHKBP1-219ENST00000599575 ANO8Q9HCE9 1232 aaPredicted RBP21.49■■□□□ 1.03
SHKBP1-219ENST00000599575 SSFA2P28290 1259 aa21.48■■□□□ 1.03
SHKBP1-219ENST00000599575 CRKLP46109 303 aaKnown RBP21.48■■□□□ 1.03
SHKBP1-219ENST00000599575 CCDC87Q9NVE4 849 aa21.48■■□□□ 1.03
SHKBP1-219ENST00000599575 C4BP0C0L5 1744 aa21.48■■□□□ 1.03
SHKBP1-219ENST00000599575 E9PSI1 815 aa21.47■■□□□ 1.03
SHKBP1-219ENST00000599575 RPS6KA4O75676 772 aa21.47■■□□□ 1.03
SHKBP1-219ENST00000599575 ZNF827Q17R98 1081 aa21.47■■□□□ 1.03
SHKBP1-219ENST00000599575 RTCBQ9Y3I0 505 aaKnown RBP21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms