RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 MAP3K5Q99683 1374 aa18.47■□□□□ 0.55
UPF1-205ENST00000598209 NFATC2IPQ8NCF5 419 aa18.47■□□□□ 0.55
UPF1-205ENST00000598209 AKT1S1Q96B36 256 aa18.47■□□□□ 0.55
UPF1-205ENST00000598209 LOC102724428A0A0B4J2F2 783 aa18.46■□□□□ 0.55
UPF1-205ENST00000598209 SIK1P57059 783 aa18.46■□□□□ 0.55
UPF1-205ENST00000598209 C4BP0C0L5 1744 aa18.46■□□□□ 0.55
UPF1-205ENST00000598209 DLG5Q8TDM6 1919 aa18.45■□□□□ 0.54
UPF1-205ENST00000598209 ZNF831Q5JPB2 1677 aa18.45■□□□□ 0.54
UPF1-205ENST00000598209 GNAT3A8MTJ3 354 aa18.45■□□□□ 0.54
UPF1-205ENST00000598209 PDGFDQ9GZP0 370 aaPredicted RBP18.45■□□□□ 0.54
UPF1-205ENST00000598209 SLC52A2Q9HAB3 445 aa18.45■□□□□ 0.54
UPF1-205ENST00000598209 SIPA1L3O60292 1781 aaPredicted RBP18.45■□□□□ 0.54
UPF1-205ENST00000598209 HMGB2P26583 209 aaKnown RBP18.44■□□□□ 0.54
UPF1-205ENST00000598209 TFCP2L1Q9NZI6 479 aa18.43■□□□□ 0.54
UPF1-205ENST00000598209 NEFMP07197 916 aa18.42■□□□□ 0.54
UPF1-205ENST00000598209 ATP6V1AP38606 617 aa18.42■□□□□ 0.54
UPF1-205ENST00000598209 RBM42Q9BTD8 480 aaKnown RBP18.42■□□□□ 0.54
UPF1-205ENST00000598209 UBR3Q6ZT12 1888 aa18.41■□□□□ 0.54
UPF1-205ENST00000598209 COL5A3P25940 1745 aaPredicted RBP18.41■□□□□ 0.54
UPF1-205ENST00000598209 ITPK1Q13572 414 aa18.41■□□□□ 0.54
UPF1-205ENST00000598209 IL17REQ8NFR9 667 aa18.41■□□□□ 0.54
UPF1-205ENST00000598209 PLEKHF1Q96S99 279 aa18.41■□□□□ 0.54
UPF1-205ENST00000598209 PNPLA7Q6ZV29 1317 aa18.41■□□□□ 0.54
UPF1-205ENST00000598209 ZBTB7AO95365 584 aa18.4■□□□□ 0.54
UPF1-205ENST00000598209 LINC00116Q8NCU8 138 aa18.4■□□□□ 0.54
UPF1-205ENST00000598209 SLC4A9Q96Q91 983 aa18.4■□□□□ 0.54
UPF1-205ENST00000598209 PNNQ9H307 717 aaKnown RBP18.4■□□□□ 0.54
UPF1-205ENST00000598209 SPON1Q9HCB6 807 aa18.4■□□□□ 0.54
UPF1-205ENST00000598209 PTCD1O75127 700 aaKnown RBP18.39■□□□□ 0.53
UPF1-205ENST00000598209 TEFQ10587 303 aa18.39■□□□□ 0.53
UPF1-205ENST00000598209 TJP1Q07157 1748 aa18.39■□□□□ 0.53
UPF1-205ENST00000598209 UBR2Q8IWV8 1755 aa18.39■□□□□ 0.53
UPF1-205ENST00000598209 CEMIPQ8WUJ3 1361 aa18.39■□□□□ 0.53
UPF1-205ENST00000598209 CICQ96RK0 1608 aaPredicted RBP18.38■□□□□ 0.53
UPF1-205ENST00000598209 SLC39A6Q13433 755 aa18.38■□□□□ 0.53
UPF1-205ENST00000598209 AK7Q96M32 723 aa18.38■□□□□ 0.53
UPF1-205ENST00000598209 MAPK8IP3Q9UPT6 1336 aa18.38■□□□□ 0.53
UPF1-205ENST00000598209 WDR43Q15061 677 aaKnown RBP eCLIP18.37■□□□□ 0.53
UPF1-205ENST00000598209 RTF1Q92541 710 aaKnown RBP18.37■□□□□ 0.53
UPF1-205ENST00000598209 MTFR1LQ9H019 292 aa18.37■□□□□ 0.53
UPF1-205ENST00000598209 MYH14Q7Z406 1995 aaKnown RBP18.37■□□□□ 0.53
UPF1-205ENST00000598209 SRCAPQ6ZRS2 3230 aa18.36■□□□□ 0.53
UPF1-205ENST00000598209 KCPQ6ZWJ8 1503 aa18.36■□□□□ 0.53
UPF1-205ENST00000598209 ATF5Q9Y2D1 282 aaPredicted RBP18.36■□□□□ 0.53
UPF1-205ENST00000598209 HTATSF1O43719 755 aaKnown RBP18.35■□□□□ 0.53
UPF1-205ENST00000598209 NFE2L2Q16236 605 aa18.35■□□□□ 0.53
UPF1-205ENST00000598209 MCM10Q7L590 875 aa18.35■□□□□ 0.53
UPF1-205ENST00000598209 COL23A1Q86Y22 540 aaPredicted RBP18.35■□□□□ 0.53
UPF1-205ENST00000598209 COL24A1Q17RW2 1714 aa18.35■□□□□ 0.53
UPF1-205ENST00000598209 MSH5O43196 834 aa18.34■□□□□ 0.53
UPF1-205ENST00000598209 ANP32CO43423 234 aa18.34■□□□□ 0.53
UPF1-205ENST00000598209 DCTN1Q14203 1278 aa18.34■□□□□ 0.53
UPF1-205ENST00000598209 SLC16A10Q8TF71 515 aa18.34■□□□□ 0.53
UPF1-205ENST00000598209 GNPATO15228 680 aa18.33■□□□□ 0.52
UPF1-205ENST00000598209 AMIGO3Q86WK7 504 aa18.33■□□□□ 0.52
UPF1-205ENST00000598209 TTC5Q8N0Z6 440 aa18.33■□□□□ 0.52
UPF1-205ENST00000598209 FLAD1Q8NFF5 587 aa18.33■□□□□ 0.52
UPF1-205ENST00000598209 CNTNAP4Q9C0A0 1308 aa18.32■□□□□ 0.52
UPF1-205ENST00000598209 PHF14O94880 888 aa18.32■□□□□ 0.52
UPF1-205ENST00000598209 PTGER2P43116 358 aa18.32■□□□□ 0.52
UPF1-205ENST00000598209 SMIM5Q71RC9 77 aa18.32■□□□□ 0.52
UPF1-205ENST00000598209 CCDC146Q8IYE0 955 aa18.32■□□□□ 0.52
UPF1-205ENST00000598209 PPP1R1BQ9UD71 204 aaPredicted RBP18.32■□□□□ 0.52
UPF1-205ENST00000598209 ADAMTS8Q9UP79 889 aa18.32■□□□□ 0.52
UPF1-205ENST00000598209 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.31■□□□□ 0.52
UPF1-205ENST00000598209 BTBD11A6QL63 1104 aa18.31■□□□□ 0.52
UPF1-205ENST00000598209 SSFA2P28290 1259 aa18.31■□□□□ 0.52
UPF1-205ENST00000598209 RC3H1Q5TC82 1133 aaKnown RBP18.31■□□□□ 0.52
UPF1-205ENST00000598209 ZNF790Q6PG37 636 aa18.31■□□□□ 0.52
UPF1-205ENST00000598209 CCDC184Q52MB2 194 aa18.3■□□□□ 0.52
UPF1-205ENST00000598209 DNAJC10Q8IXB1 793 aa18.3■□□□□ 0.52
UPF1-205ENST00000598209 SGIP1Q9BQI5 828 aa18.3■□□□□ 0.52
UPF1-205ENST00000598209 CRKLP46109 303 aaKnown RBP18.29■□□□□ 0.52
UPF1-205ENST00000598209 VSIG10Q8N0Z9 540 aa18.29■□□□□ 0.52
UPF1-205ENST00000598209 RUNDC1Q96C34 613 aa18.29■□□□□ 0.52
UPF1-205ENST00000598209 RTCBQ9Y3I0 505 aaKnown RBP18.29■□□□□ 0.52
UPF1-205ENST00000598209 KCNQ3O43525 872 aa18.28■□□□□ 0.52
UPF1-205ENST00000598209 TMPOP42166 694 aaKnown RBP18.28■□□□□ 0.52
UPF1-205ENST00000598209 RIPK4P57078 832 aa18.28■□□□□ 0.52
UPF1-205ENST00000598209 ZNF496Q96IT1 587 aaPredicted RBP18.28■□□□□ 0.52
UPF1-205ENST00000598209 C4AP0C0L4 1744 aa18.28■□□□□ 0.52
UPF1-205ENST00000598209 HEG1Q9ULI3 1381 aa18.28■□□□□ 0.52
UPF1-205ENST00000598209 KDM3BQ7LBC6 1761 aa18.27■□□□□ 0.52
UPF1-205ENST00000598209 RPS6KA4O75676 772 aa18.27■□□□□ 0.52
UPF1-205ENST00000598209 TAF7Q15545 349 aaPredicted RBP18.27■□□□□ 0.52
UPF1-205ENST00000598209 THUMPD2Q9BTF0 503 aaKnown RBP18.27■□□□□ 0.52
UPF1-205ENST00000598209 CYP19A1P11511 503 aaPredicted RBP18.26■□□□□ 0.51
UPF1-205ENST00000598209 POLD1P28340 1107 aa18.26■□□□□ 0.51
UPF1-205ENST00000598209 MSL1Q68DK7 614 aa18.26■□□□□ 0.51
UPF1-205ENST00000598209 FMNL2Q96PY5 1086 aa18.26■□□□□ 0.51
UPF1-205ENST00000598209 RRP7AQ9Y3A4 280 aaKnown RBP18.26■□□□□ 0.51
UPF1-205ENST00000598209 ADRA2BP18089 450 aa18.25■□□□□ 0.51
UPF1-205ENST00000598209 TRAPPC3LQ5T215 181 aa18.25■□□□□ 0.51
UPF1-205ENST00000598209 INTS5Q6P9B9 1019 aaKnown RBP18.25■□□□□ 0.51
UPF1-205ENST00000598209 CCDC87Q9NVE4 849 aa18.25■□□□□ 0.51
UPF1-205ENST00000598209 LMOD3Q0VAK6 560 aa18.24■□□□□ 0.51
UPF1-205ENST00000598209 NEUROD2Q15784 382 aa18.24■□□□□ 0.51
UPF1-205ENST00000598209 ARXQ96QS3 562 aa18.24■□□□□ 0.51
UPF1-205ENST00000598209 MRS2Q9HD23 443 aa18.24■□□□□ 0.51
UPF1-205ENST00000598209 PNISRQ8TF01 805 aaKnown RBP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 182 ms