RNA–Protein interactions for RNA: ENST00000597215.5

VRK3-213, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 836 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-213ENST00000597215 PLSCR1O15162 318 aa18.89■□□□□ 0.61
VRK3-213ENST00000597215 MCM10Q7L590 875 aa18.89■□□□□ 0.61
VRK3-213ENST00000597215 SIPA1L3O60292 1781 aaPredicted RBP18.88■□□□□ 0.61
VRK3-213ENST00000597215 DCTN1Q14203 1278 aa18.88■□□□□ 0.61
VRK3-213ENST00000597215 NFATC2IPQ8NCF5 419 aa18.88■□□□□ 0.61
VRK3-213ENST00000597215 EN1Q05925 392 aaPredicted RBP18.87■□□□□ 0.61
VRK3-213ENST00000597215 DEFB132Q7Z7B7 95 aa18.87■□□□□ 0.61
VRK3-213ENST00000597215 SMARCC1Q92922 1105 aaPredicted RBP18.87■□□□□ 0.61
VRK3-213ENST00000597215 LY75O60449 1722 aa18.86■□□□□ 0.61
VRK3-213ENST00000597215 PAPPAQ13219 1627 aa18.85■□□□□ 0.61
VRK3-213ENST00000597215 PALLDQ8WX93 1383 aa18.85■□□□□ 0.61
VRK3-213ENST00000597215 CAMKK2Q96RR4 588 aa18.85■□□□□ 0.61
VRK3-213ENST00000597215 ASAP1Q9ULH1 1129 aa18.85■□□□□ 0.61
VRK3-213ENST00000597215 TRIM35Q9UPQ4 493 aa18.85■□□□□ 0.61
VRK3-213ENST00000597215 NCBP3Q53F19 620 aaKnown RBP18.84■□□□□ 0.61
VRK3-213ENST00000597215 ATG3Q9NT62 314 aa18.84■□□□□ 0.61
VRK3-213ENST00000597215 RREB1Q92766 1687 aa18.84■□□□□ 0.61
VRK3-213ENST00000597215 EZH2Q15910 746 aaKnown RBP18.83■□□□□ 0.6
VRK3-213ENST00000597215 THUMPD2Q9BTF0 503 aaKnown RBP18.83■□□□□ 0.6
VRK3-213ENST00000597215 TXNRD1Q16881 649 aa18.82■□□□□ 0.6
VRK3-213ENST00000597215 NGEFQ8N5V2 710 aa18.82■□□□□ 0.6
VRK3-213ENST00000597215 BTBD11A6QL63 1104 aa18.81■□□□□ 0.6
VRK3-213ENST00000597215 TAF7Q15545 349 aaPredicted RBP18.81■□□□□ 0.6
VRK3-213ENST00000597215 CCDC27Q2M243 656 aa18.81■□□□□ 0.6
VRK3-213ENST00000597215 SLC27A3Q5K4L6 730 aa18.81■□□□□ 0.6
VRK3-213ENST00000597215 CALD1Q05682 793 aaKnown RBP18.8■□□□□ 0.6
VRK3-213ENST00000597215 SLC39A6Q13433 755 aa18.8■□□□□ 0.6
VRK3-213ENST00000597215 TTC5Q8N0Z6 440 aa18.8■□□□□ 0.6
VRK3-213ENST00000597215 UBR2Q8IWV8 1755 aa18.8■□□□□ 0.6
VRK3-213ENST00000597215 NUP188Q5SRE5 1749 aa18.8■□□□□ 0.6
VRK3-213ENST00000597215 SENP3-EIF4A1A0A087X0R7 540 aa18.79■□□□□ 0.6
VRK3-213ENST00000597215 CCNL1Q9UK58 526 aaPredicted RBP18.79■□□□□ 0.6
VRK3-213ENST00000597215 ZNF831Q5JPB2 1677 aa18.79■□□□□ 0.6
VRK3-213ENST00000597215 KDM3BQ7LBC6 1761 aa18.78■□□□□ 0.6
VRK3-213ENST00000597215 LOC102724428A0A0B4J2F2 783 aa18.78■□□□□ 0.6
VRK3-213ENST00000597215 SIK1P57059 783 aa18.78■□□□□ 0.6
VRK3-213ENST00000597215 ZNF790Q6PG37 636 aa18.78■□□□□ 0.6
VRK3-213ENST00000597215 PROM2Q8N271 834 aa18.78■□□□□ 0.6
VRK3-213ENST00000597215 RBM42Q9BTD8 480 aaKnown RBP18.78■□□□□ 0.6
VRK3-213ENST00000597215 KCPQ6ZWJ8 1503 aa18.78■□□□□ 0.6
VRK3-213ENST00000597215 PTCD1O75127 700 aaKnown RBP18.77■□□□□ 0.6
VRK3-213ENST00000597215 HMGB2P26583 209 aaKnown RBP18.77■□□□□ 0.6
VRK3-213ENST00000597215 WWC1Q8IX03 1113 aa18.77■□□□□ 0.6
VRK3-213ENST00000597215 BABAM1Q9NWV8 329 aa18.77■□□□□ 0.6
VRK3-213ENST00000597215 SALL2Q9Y467 1007 aaPredicted RBP18.77■□□□□ 0.6
VRK3-213ENST00000597215 LRRC4BQ9NT99 713 aa18.76■□□□□ 0.59
VRK3-213ENST00000597215 C5P01031 1676 aa18.76■□□□□ 0.59
VRK3-213ENST00000597215 CICQ96RK0 1608 aaPredicted RBP18.75■□□□□ 0.59
VRK3-213ENST00000597215 TAF1LQ8IZX4 1826 aa18.75■□□□□ 0.59
VRK3-213ENST00000597215 MIS18AQ9NYP9 233 aa18.75■□□□□ 0.59
VRK3-213ENST00000597215 TSPYL4Q9UJ04 414 aa18.75■□□□□ 0.59
VRK3-213ENST00000597215 ATP6V1AP38606 617 aa18.74■□□□□ 0.59
VRK3-213ENST00000597215 FMNL2Q96PY5 1086 aa18.74■□□□□ 0.59
VRK3-213ENST00000597215 LAS1LQ9Y4W2 734 aaKnown RBP18.74■□□□□ 0.59
VRK3-213ENST00000597215 KCNQ3O43525 872 aa18.73■□□□□ 0.59
VRK3-213ENST00000597215 KCNQ4P56696 695 aa18.73■□□□□ 0.59
VRK3-213ENST00000597215 GNAI1P63096 354 aa18.73■□□□□ 0.59
VRK3-213ENST00000597215 VSIG10Q8N0Z9 540 aa18.73■□□□□ 0.59
VRK3-213ENST00000597215 ZNF496Q96IT1 587 aaPredicted RBP18.73■□□□□ 0.59
VRK3-213ENST00000597215 CFAP44Q96MT7 982 aa18.73■□□□□ 0.59
VRK3-213ENST00000597215 IFT57Q9NWB7 429 aa18.73■□□□□ 0.59
VRK3-213ENST00000597215 TJP1Q07157 1748 aa18.73■□□□□ 0.59
VRK3-213ENST00000597215 HEG1Q9ULI3 1381 aa18.72■□□□□ 0.59
VRK3-213ENST00000597215 CHL1O00533 1208 aa18.72■□□□□ 0.59
VRK3-213ENST00000597215 WDR63Q8IWG1 891 aa18.72■□□□□ 0.59
VRK3-213ENST00000597215 SLC4A9Q96Q91 983 aa18.72■□□□□ 0.59
VRK3-213ENST00000597215 IL16Q14005 1332 aa18.72■□□□□ 0.59
VRK3-213ENST00000597215 COL5A3P25940 1745 aaPredicted RBP18.71■□□□□ 0.59
VRK3-213ENST00000597215 ZNF853P0CG23 659 aa18.71■□□□□ 0.59
VRK3-213ENST00000597215 ITPK1Q13572 414 aa18.71■□□□□ 0.59
VRK3-213ENST00000597215 NBPF14Q5TI25 921 aa18.71■□□□□ 0.59
VRK3-213ENST00000597215 C4BP0C0L5 1744 aa18.7■□□□□ 0.58
VRK3-213ENST00000597215 EIF4A1P60842 406 aaKnown RBP18.69■□□□□ 0.58
VRK3-213ENST00000597215 LINC00116Q8NCU8 138 aa18.69■□□□□ 0.58
VRK3-213ENST00000597215 STK32BQ9NY57 414 aa18.69■□□□□ 0.58
VRK3-213ENST00000597215 ZNF521Q96K83 1311 aa18.69■□□□□ 0.58
VRK3-213ENST00000597215 DNAJC10Q8IXB1 793 aa18.68■□□□□ 0.58
VRK3-213ENST00000597215 TEX13AQ9BXU3 409 aaPredicted RBP18.68■□□□□ 0.58
VRK3-213ENST00000597215 ANO8Q9HCE9 1232 aaPredicted RBP18.68■□□□□ 0.58
VRK3-213ENST00000597215 MBIPQ9NS73 344 aa18.68■□□□□ 0.58
VRK3-213ENST00000597215 SNRPA1P09661 255 aaKnown RBP18.67■□□□□ 0.58
VRK3-213ENST00000597215 HNRNPUQ00839 825 aaKnown RBP eCLIP18.67■□□□□ 0.58
VRK3-213ENST00000597215 LAMB4A4D0S4 1761 aa18.66■□□□□ 0.58
VRK3-213ENST00000597215 STARD3NLO95772 234 aa18.66■□□□□ 0.58
VRK3-213ENST00000597215 SLC15A2Q16348 729 aa18.66■□□□□ 0.58
VRK3-213ENST00000597215 ZNF827Q17R98 1081 aa18.66■□□□□ 0.58
VRK3-213ENST00000597215 AKT1S1Q96B36 256 aa18.66■□□□□ 0.58
VRK3-213ENST00000597215 AK7Q96M32 723 aa18.66■□□□□ 0.58
VRK3-213ENST00000597215 CNTNAP4Q9C0A0 1308 aa18.66■□□□□ 0.58
VRK3-213ENST00000597215 CYP19A1P11511 503 aaPredicted RBP18.65■□□□□ 0.58
VRK3-213ENST00000597215 RC3H1Q5TC82 1133 aaKnown RBP18.65■□□□□ 0.58
VRK3-213ENST00000597215 QSER1Q2KHR3 1735 aa18.64■□□□□ 0.57
VRK3-213ENST00000597215 GIGYF1O75420 1035 aaPredicted RBP18.64■□□□□ 0.57
VRK3-213ENST00000597215 CRKLP46109 303 aaKnown RBP18.64■□□□□ 0.57
VRK3-213ENST00000597215 GOLGA2Q08379 1002 aa18.64■□□□□ 0.57
VRK3-213ENST00000597215 TUBGCP6Q96RT7 1819 aa18.64■□□□□ 0.57
VRK3-213ENST00000597215 MYH14Q7Z406 1995 aaKnown RBP18.64■□□□□ 0.57
VRK3-213ENST00000597215 UBR3Q6ZT12 1888 aa18.63■□□□□ 0.57
VRK3-213ENST00000597215 TSR2Q969E8 191 aaKnown RBP18.63■□□□□ 0.57
VRK3-213ENST00000597215 MYH16Q9H6N6 1097 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms