RNA–Protein interactions for RNA: ENST00000592052.1

TMEM259-208, Transcript of transmembrane protein 259, human

Gene TMEM259, Length 1,637 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM259-208	ENST00000592052	VIRMA	Q69YN4	1812 aa	Known RBP	32.49	■■■□□ 2.79
TMEM259-208	ENST00000592052	SALL2	Q9Y467	1007 aa	Predicted RBP	32.48	■■■□□ 2.79
TMEM259-208	ENST00000592052	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.46	■■■□□ 2.79	2e-11	■■■■■ 54.3
TMEM259-208	ENST00000592052	APBA3	O96018	575 aa		32.45	■■■□□ 2.79
TMEM259-208	ENST00000592052	WWC1	Q8IX03	1113 aa		32.44	■■■□□ 2.78
TMEM259-208	ENST00000592052	BTAF1	O14981	1849 aa		32.44	■■■□□ 2.78
TMEM259-208	ENST00000592052	TAF7	Q15545	349 aa	Predicted RBP	32.44	■■■□□ 2.78
TMEM259-208	ENST00000592052	TNS1	Q9HBL0	1735 aa	Known RBP	32.44	■■■□□ 2.78
TMEM259-208	ENST00000592052	CALD1	Q05682	793 aa	Known RBP	32.43	■■■□□ 2.78
TMEM259-208	ENST00000592052	BTBD11	A6QL63	1104 aa		32.4	■■■□□ 2.78
TMEM259-208	ENST00000592052	SMARCC1	Q92922	1105 aa	Predicted RBP	32.4	■■■□□ 2.78
TMEM259-208	ENST00000592052	ASAP1	Q9ULH1	1129 aa		32.4	■■■□□ 2.78
TMEM259-208	ENST00000592052	SIPA1L3	O60292	1781 aa	Predicted RBP	32.4	■■■□□ 2.78
TMEM259-208	ENST00000592052	ATG3	Q9NT62	314 aa		32.39	■■■□□ 2.78
TMEM259-208	ENST00000592052	PLSCR1	O15162	318 aa		32.38	■■■□□ 2.77
TMEM259-208	ENST00000592052	BAG6	P46379	1132 aa		32.38	■■■□□ 2.77
TMEM259-208	ENST00000592052	HNRNPU	Q00839	825 aa	Known RBP eCLIP	32.37	■■■□□ 2.77
TMEM259-208	ENST00000592052	PALLD	Q8WX93	1383 aa		32.36	■■■□□ 2.77
TMEM259-208	ENST00000592052	SLC39A6	Q13433	755 aa		32.36	■■■□□ 2.77
TMEM259-208	ENST00000592052	WDR63	Q8IWG1	891 aa		32.35	■■■□□ 2.77
TMEM259-208	ENST00000592052	TTC5	Q8N0Z6	440 aa		32.35	■■■□□ 2.77
TMEM259-208	ENST00000592052	ZNF790	Q6PG37	636 aa		32.34	■■■□□ 2.77
TMEM259-208	ENST00000592052	BABAM1	Q9NWV8	329 aa		32.34	■■■□□ 2.77
TMEM259-208	ENST00000592052	MIS18A	Q9NYP9	233 aa		32.34	■■■□□ 2.77
TMEM259-208	ENST00000592052	LAS1L	Q9Y4W2	734 aa	Known RBP	32.34	■■■□□ 2.77
TMEM259-208	ENST00000592052	CFAP44	Q96MT7	982 aa		32.33	■■■□□ 2.77
TMEM259-208	ENST00000592052	IL16	Q14005	1332 aa		32.32	■■■□□ 2.76
TMEM259-208	ENST00000592052	PAPPA	Q13219	1627 aa		32.32	■■■□□ 2.76
TMEM259-208	ENST00000592052	IFT57	Q9NWB7	429 aa		32.32	■■■□□ 2.76
TMEM259-208	ENST00000592052	TSPYL4	Q9UJ04	414 aa		32.32	■■■□□ 2.76
TMEM259-208	ENST00000592052	ZNF521	Q96K83	1311 aa		32.31	■■■□□ 2.76
TMEM259-208	ENST00000592052	CHL1	O00533	1208 aa		32.31	■■■□□ 2.76
TMEM259-208	ENST00000592052	GNAI1	P63096	354 aa		32.31	■■■□□ 2.76
TMEM259-208	ENST00000592052	EN1	Q05925	392 aa	Predicted RBP	32.31	■■■□□ 2.76
TMEM259-208	ENST00000592052	DEFB132	Q7Z7B7	95 aa		32.31	■■■□□ 2.76
TMEM259-208	ENST00000592052	PTCD1	O75127	700 aa	Known RBP	32.29	■■■□□ 2.76
TMEM259-208	ENST00000592052	CAMKK2	Q96RR4	588 aa		32.29	■■■□□ 2.76
TMEM259-208	ENST00000592052	ZNF853	P0CG23	659 aa		32.29	■■■□□ 2.76
TMEM259-208	ENST00000592052	RBM42	Q9BTD8	480 aa	Known RBP	32.29	■■■□□ 2.76
TMEM259-208	ENST00000592052	RGPD3	A6NKT7	1758 aa	Predicted RBP	32.28	■■■□□ 2.76
TMEM259-208	ENST00000592052	RGPD4	Q7Z3J3	1758 aa		32.28	■■■□□ 2.76
TMEM259-208	ENST00000592052	LOC102724428	A0A0B4J2F2	783 aa		32.27	■■■□□ 2.76
TMEM259-208	ENST00000592052	KCNQ3	O43525	872 aa		32.27	■■■□□ 2.76
TMEM259-208	ENST00000592052	SIK1	P57059	783 aa		32.27	■■■□□ 2.76
TMEM259-208	ENST00000592052	EZH2	Q15910	746 aa	Known RBP	32.26	■■■□□ 2.76
TMEM259-208	ENST00000592052	SOCS7	O14512	581 aa		32.26	■■■□□ 2.75
TMEM259-208	ENST00000592052	TXNRD1	Q16881	649 aa		32.26	■■■□□ 2.75
TMEM259-208	ENST00000592052	SLC27A3	Q5K4L6	730 aa		32.26	■■■□□ 2.75
TMEM259-208	ENST00000592052	FMNL2	Q96PY5	1086 aa		32.26	■■■□□ 2.75
TMEM259-208	ENST00000592052	KCP	Q6ZWJ8	1503 aa		32.26	■■■□□ 2.75
TMEM259-208	ENST00000592052	LY75	O60449	1722 aa		32.25	■■■□□ 2.75
TMEM259-208	ENST00000592052	ZNF496	Q96IT1	587 aa	Predicted RBP	32.25	■■■□□ 2.75
TMEM259-208	ENST00000592052	CCNL1	Q9UK58	526 aa	Predicted RBP	32.25	■■■□□ 2.75
TMEM259-208	ENST00000592052	KDM3B	Q7LBC6	1761 aa		32.24	■■■□□ 2.75
TMEM259-208	ENST00000592052	PROM2	Q8N271	834 aa		32.24	■■■□□ 2.75
TMEM259-208	ENST00000592052	MBIP	Q9NS73	344 aa		32.24	■■■□□ 2.75
TMEM259-208	ENST00000592052	UBR2	Q8IWV8	1755 aa		32.23	■■■□□ 2.75
TMEM259-208	ENST00000592052	GOLGA2	Q08379	1002 aa		32.23	■■■□□ 2.75
TMEM259-208	ENST00000592052	ATP6V1A	P38606	617 aa		32.22	■■■□□ 2.75
TMEM259-208	ENST00000592052	VSIG10	Q8N0Z9	540 aa		32.22	■■■□□ 2.75
TMEM259-208	ENST00000592052	EIF4A1	P60842	406 aa	Known RBP	32.21	■■■□□ 2.75
TMEM259-208	ENST00000592052	ZBED9	Q6R2W3	1325 aa		32.2	■■■□□ 2.75
TMEM259-208	ENST00000592052	SLC4A9	Q96Q91	983 aa		32.2	■■■□□ 2.75
TMEM259-208	ENST00000592052	HEG1	Q9ULI3	1381 aa		32.19	■■■□□ 2.74
TMEM259-208	ENST00000592052	KCNQ4	P56696	695 aa		32.19	■■■□□ 2.74
TMEM259-208	ENST00000592052	MYH16	Q9H6N6	1097 aa		32.19	■■■□□ 2.74
TMEM259-208	ENST00000592052	LRRC4B	Q9NT99	713 aa		32.19	■■■□□ 2.74
TMEM259-208	ENST00000592052	TSR2	Q969E8	191 aa	Known RBP	32.18	■■■□□ 2.74
TMEM259-208	ENST00000592052	SPINK5	Q9NQ38	1064 aa	Predicted RBP	32.18	■■■□□ 2.74
TMEM259-208	ENST00000592052	HMGB2	P26583	209 aa	Known RBP	32.18	■■■□□ 2.74
TMEM259-208	ENST00000592052		E9PSI1	815 aa		32.17	■■■□□ 2.74
TMEM259-208	ENST00000592052	ZNF831	Q5JPB2	1677 aa		32.17	■■■□□ 2.74
TMEM259-208	ENST00000592052	SNRPA1	P09661	255 aa	Known RBP	32.15	■■■□□ 2.74
TMEM259-208	ENST00000592052	ITPK1	Q13572	414 aa		32.15	■■■□□ 2.74
TMEM259-208	ENST00000592052	FANCI	Q9NVI1	1328 aa		32.15	■■■□□ 2.74
TMEM259-208	ENST00000592052	TEX13A	Q9BXU3	409 aa	Predicted RBP	32.14	■■■□□ 2.74
TMEM259-208	ENST00000592052	RREB1	Q92766	1687 aa		32.14	■■■□□ 2.74
TMEM259-208	ENST00000592052	SLFN5	Q08AF3	891 aa		32.13	■■■□□ 2.73
TMEM259-208	ENST00000592052	YTHDC1	Q96MU7	727 aa	Known RBP	32.13	■■■□□ 2.73
TMEM259-208	ENST00000592052	GIGYF1	O75420	1035 aa	Predicted RBP	32.12	■■■□□ 2.73
TMEM259-208	ENST00000592052	DNAJC10	Q8IXB1	793 aa		32.12	■■■□□ 2.73
TMEM259-208	ENST00000592052	CDCA7L	Q96GN5	454 aa		32.12	■■■□□ 2.73
TMEM259-208	ENST00000592052	CIC	Q96RK0	1608 aa	Predicted RBP	32.12	■■■□□ 2.73
TMEM259-208	ENST00000592052	TJP1	Q07157	1748 aa		32.1	■■■□□ 2.73
TMEM259-208	ENST00000592052	LINC00116	Q8NCU8	138 aa		32.1	■■■□□ 2.73
TMEM259-208	ENST00000592052	STARD3NL	O95772	234 aa		32.09	■■■□□ 2.73
TMEM259-208	ENST00000592052	KRT24	Q2M2I5	525 aa		32.09	■■■□□ 2.73
TMEM259-208	ENST00000592052	C5	P01031	1676 aa		32.09	■■■□□ 2.73
TMEM259-208	ENST00000592052	PRAMEF22	A3QJZ6	481 aa		32.08	■■■□□ 2.73
TMEM259-208	ENST00000592052	NUP188	Q5SRE5	1749 aa		32.08	■■■□□ 2.73
TMEM259-208	ENST00000592052	CYP19A1	P11511	503 aa	Predicted RBP	32.07	■■■□□ 2.72
TMEM259-208	ENST00000592052	USP16	Q9Y5T5	823 aa		32.07	■■■□□ 2.72
TMEM259-208	ENST00000592052	HOXB7	P09629	217 aa		32.06	■■■□□ 2.72
TMEM259-208	ENST00000592052	DUSP27	Q5VZP5	1158 aa		32.06	■■■□□ 2.72
TMEM259-208	ENST00000592052	TRMT2A	Q8IZ69	625 aa	Known RBP	32.06	■■■□□ 2.72
TMEM259-208	ENST00000592052	C8orf58	Q8NAV2	365 aa		32.06	■■■□□ 2.72
TMEM259-208	ENST00000592052	TAF1L	Q8IZX4	1826 aa		32.06	■■■□□ 2.72
TMEM259-208	ENST00000592052	CRKL	P46109	303 aa	Known RBP	32.04	■■■□□ 2.72
TMEM259-208	ENST00000592052	EXOSC9	Q06265	439 aa	Known RBP	32.04	■■■□□ 2.72
TMEM259-208	ENST00000592052	NBPF14	Q5TI25	921 aa		32.04	■■■□□ 2.72

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms