RNA–Protein interactions for RNA: ENST00000591849.5

BRCA1-227, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-227ENST00000591849 AK7Q96M32 723 aa13.38□□□□□ -0.27
BRCA1-227ENST00000591849 QSER1Q2KHR3 1735 aa13.38□□□□□ -0.27
BRCA1-227ENST00000591849 PKD1L3Q7Z443 1732 aa13.38□□□□□ -0.27
BRCA1-227ENST00000591849 DOT1LQ8TEK3 1739 aa13.38□□□□□ -0.27
BRCA1-227ENST00000591849 CHD4Q14839 1912 aa13.37□□□□□ -0.27
BRCA1-227ENST00000591849 SHANK3Q9BYB0 1731 aa13.37□□□□□ -0.27
BRCA1-227ENST00000591849 PTCD1O75127 700 aaKnown RBP13.37□□□□□ -0.27
BRCA1-227ENST00000591849 ZBTB7AO95365 584 aa13.37□□□□□ -0.27
BRCA1-227ENST00000591849 WDR43Q15061 677 aaKnown RBP eCLIP13.37□□□□□ -0.27
BRCA1-227ENST00000591849 AKT1S1Q96B36 256 aa13.37□□□□□ -0.27
BRCA1-227ENST00000591849 SLC52A2Q9HAB3 445 aa13.37□□□□□ -0.27
BRCA1-227ENST00000591849 ATF5Q9Y2D1 282 aaPredicted RBP13.37□□□□□ -0.27
BRCA1-227ENST00000591849 MAPK8IP3Q9UPT6 1336 aa13.37□□□□□ -0.27
BRCA1-227ENST00000591849 PHACTR3Q96KR7 559 aa13.36□□□□□ -0.27
BRCA1-227ENST00000591849 MAP3K5Q99683 1374 aa13.35□□□□□ -0.27
BRCA1-227ENST00000591849 PRKRIP1Q9H875 184 aaPredicted RBP13.35□□□□□ -0.27
BRCA1-227ENST00000591849 KDM6AO15550 1401 aaPredicted RBP13.35□□□□□ -0.27
BRCA1-227ENST00000591849 ANP32CO43423 234 aa13.34□□□□□ -0.27
BRCA1-227ENST00000591849 TTC5Q8N0Z6 440 aa13.34□□□□□ -0.27
BRCA1-227ENST00000591849 FLAD1Q8NFF5 587 aa13.34□□□□□ -0.27
BRCA1-227ENST00000591849 PDGFDQ9GZP0 370 aaPredicted RBP13.34□□□□□ -0.27
BRCA1-227ENST00000591849 MTFR1LQ9H019 292 aa13.34□□□□□ -0.27
BRCA1-227ENST00000591849 PHF14O94880 888 aa13.33□□□□□ -0.28
BRCA1-227ENST00000591849 SLC39A6Q13433 755 aa13.33□□□□□ -0.28
BRCA1-227ENST00000591849 IL17REQ8NFR9 667 aa13.33□□□□□ -0.28
BRCA1-227ENST00000591849 SLC16A10Q8TF71 515 aa13.33□□□□□ -0.28
BRCA1-227ENST00000591849 TUBGCP6Q96RT7 1819 aa13.32□□□□□ -0.28
BRCA1-227ENST00000591849 POLD1P28340 1107 aa13.32□□□□□ -0.28
BRCA1-227ENST00000591849 ITPK1Q13572 414 aa13.32□□□□□ -0.28
BRCA1-227ENST00000591849 LINC00116Q8NCU8 138 aa13.32□□□□□ -0.28
BRCA1-227ENST00000591849 COL24A1Q17RW2 1714 aa13.32□□□□□ -0.28
BRCA1-227ENST00000591849 PNPLA7Q6ZV29 1317 aa13.32□□□□□ -0.28
BRCA1-227ENST00000591849 LY75O60449 1722 aa13.31□□□□□ -0.28
BRCA1-227ENST00000591849 GNPATO15228 680 aa13.31□□□□□ -0.28
BRCA1-227ENST00000591849 HTATSF1O43719 755 aaKnown RBP13.31□□□□□ -0.28
BRCA1-227ENST00000591849 YY1P25490 414 aa13.31□□□□□ -0.28
BRCA1-227ENST00000591849 UTRNP46939 3433 aa13.3□□□□□ -0.28
BRCA1-227ENST00000591849 BTBD11A6QL63 1104 aa13.3□□□□□ -0.28
BRCA1-227ENST00000591849 MCM10Q7L590 875 aa13.3□□□□□ -0.28
BRCA1-227ENST00000591849 COL23A1Q86Y22 540 aaPredicted RBP13.3□□□□□ -0.28
BRCA1-227ENST00000591849 RTCBQ9Y3I0 505 aaKnown RBP13.3□□□□□ -0.28
BRCA1-227ENST00000591849 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.29□□□□□ -0.28
BRCA1-227ENST00000591849 DCTN1Q14203 1278 aa13.29□□□□□ -0.28
BRCA1-227ENST00000591849 NFE2L2Q16236 605 aa13.29□□□□□ -0.28
BRCA1-227ENST00000591849 TRAPPC3LQ5T215 181 aa13.29□□□□□ -0.28
BRCA1-227ENST00000591849 TOGARAM1Q9Y4F4 1720 aa13.29□□□□□ -0.28
BRCA1-227ENST00000591849 ITGB4P16144 1822 aa13.28□□□□□ -0.28
BRCA1-227ENST00000591849 SSFA2P28290 1259 aa13.28□□□□□ -0.28
BRCA1-227ENST00000591849 RC3H1Q5TC82 1133 aaKnown RBP13.28□□□□□ -0.28
BRCA1-227ENST00000591849 CCDC146Q8IYE0 955 aa13.28□□□□□ -0.28
BRCA1-227ENST00000591849 KLHL34Q8N239 644 aa13.28□□□□□ -0.28
BRCA1-227ENST00000591849 SLC4A9Q96Q91 983 aa13.28□□□□□ -0.28
BRCA1-227ENST00000591849 PLEKHF1Q96S99 279 aa13.28□□□□□ -0.28
BRCA1-227ENST00000591849 PTGER2P43116 358 aa13.27□□□□□ -0.29
BRCA1-227ENST00000591849 RIPK4P57078 832 aa13.27□□□□□ -0.29
BRCA1-227ENST00000591849 MSL1Q68DK7 614 aa13.27□□□□□ -0.29
BRCA1-227ENST00000591849 ZNF790Q6PG37 636 aa13.27□□□□□ -0.29
BRCA1-227ENST00000591849 DNAJC10Q8IXB1 793 aa13.27□□□□□ -0.29
BRCA1-227ENST00000591849 ARXQ96QS3 562 aa13.27□□□□□ -0.29
BRCA1-227ENST00000591849 RPS6KA4O75676 772 aa13.26□□□□□ -0.29
BRCA1-227ENST00000591849 STARD3NLO95772 234 aa13.26□□□□□ -0.29
BRCA1-227ENST00000591849 RFC4P35249 363 aa13.26□□□□□ -0.29
BRCA1-227ENST00000591849 CRKLP46109 303 aaKnown RBP13.26□□□□□ -0.29
BRCA1-227ENST00000591849 LMOD3Q0VAK6 560 aa13.26□□□□□ -0.29
BRCA1-227ENST00000591849 TAF7Q15545 349 aaPredicted RBP13.26□□□□□ -0.29
BRCA1-227ENST00000591849 NEUROD2Q15784 382 aa13.26□□□□□ -0.29
BRCA1-227ENST00000591849 SMIM5Q71RC9 77 aa13.26□□□□□ -0.29
BRCA1-227ENST00000591849 NPM2Q86SE8 214 aaKnown RBP13.26□□□□□ -0.29
BRCA1-227ENST00000591849 RUNDC1Q96C34 613 aa13.26□□□□□ -0.29
BRCA1-227ENST00000591849 FMNL2Q96PY5 1086 aa13.26□□□□□ -0.29
BRCA1-227ENST00000591849 TEX13AQ9BXU3 409 aaPredicted RBP13.26□□□□□ -0.29
BRCA1-227ENST00000591849 ADAMTS8Q9UP79 889 aa13.26□□□□□ -0.29
BRCA1-227ENST00000591849 CNTNAP4Q9C0A0 1308 aa13.25□□□□□ -0.29
BRCA1-227ENST00000591849 VSIG10Q8N0Z9 540 aa13.25□□□□□ -0.29
BRCA1-227ENST00000591849 PNISRQ8TF01 805 aaKnown RBP13.25□□□□□ -0.29
BRCA1-227ENST00000591849 CCDC87Q9NVE4 849 aa13.25□□□□□ -0.29
BRCA1-227ENST00000591849 CEMIPQ8WUJ3 1361 aa13.24□□□□□ -0.29
BRCA1-227ENST00000591849 ADRA2BP18089 450 aa13.24□□□□□ -0.29
BRCA1-227ENST00000591849 TMPOP42166 694 aaKnown RBP13.24□□□□□ -0.29
BRCA1-227ENST00000591849 ZNF496Q96IT1 587 aaPredicted RBP13.24□□□□□ -0.29
BRCA1-227ENST00000591849 SGIP1Q9BQI5 828 aa13.24□□□□□ -0.29
BRCA1-227ENST00000591849 RRP7AQ9Y3A4 280 aaKnown RBP13.24□□□□□ -0.29
BRCA1-227ENST00000591849 CYP19A1P11511 503 aaPredicted RBP13.23□□□□□ -0.29
BRCA1-227ENST00000591849 CANXP27824 592 aaKnown RBP13.23□□□□□ -0.29
BRCA1-227ENST00000591849 ARHGEF1Q92888 912 aaKnown RBP13.23□□□□□ -0.29
BRCA1-227ENST00000591849 MRS2Q9HD23 443 aa13.23□□□□□ -0.29
BRCA1-227ENST00000591849 MIS18AQ9NYP9 233 aa13.23□□□□□ -0.29
BRCA1-227ENST00000591849 GOLGB1Q14789 3259 aaKnown RBP13.23□□□□□ -0.29
BRCA1-227ENST00000591849 TAF1LQ8IZX4 1826 aa13.23□□□□□ -0.29
BRCA1-227ENST00000591849 C5P01031 1676 aa13.22□□□□□ -0.29
BRCA1-227ENST00000591849 KCNQ3O43525 872 aa13.22□□□□□ -0.29
BRCA1-227ENST00000591849 AMIGO3Q86WK7 504 aa13.22□□□□□ -0.29
BRCA1-227ENST00000591849 THUMPD2Q9BTF0 503 aaKnown RBP13.22□□□□□ -0.29
BRCA1-227ENST00000591849 FHDC1Q9C0D6 1143 aaPredicted RBP13.22□□□□□ -0.29
BRCA1-227ENST00000591849 ZNF330Q9Y3S2 320 aaPredicted RBP13.22□□□□□ -0.29
BRCA1-227ENST00000591849 MRC1P22897 1456 aa13.22□□□□□ -0.29
BRCA1-227ENST00000591849 ZPR1O75312 459 aa13.21□□□□□ -0.29
BRCA1-227ENST00000591849 SNRPA1P09661 255 aaKnown RBP13.21□□□□□ -0.29
BRCA1-227ENST00000591849 INTS5Q6P9B9 1019 aaKnown RBP13.21□□□□□ -0.29
BRCA1-227ENST00000591849 NLGN1Q8N2Q7 840 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms