RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 MARF1Q9Y4F3 1742 aaKnown RBP13.38□□□□□ -0.27
VPS4B-206ENST00000591475 GSPT1P15170 499 aaKnown RBP13.38□□□□□ -0.27
VPS4B-206ENST00000591475 PLEKHM2Q8IWE5 1019 aa13.38□□□□□ -0.27
VPS4B-206ENST00000591475 DCTPP1Q9H773 170 aa13.38□□□□□ -0.27
VPS4B-206ENST00000591475 FLT4P35916 1363 aa13.38□□□□□ -0.27
VPS4B-206ENST00000591475 IBTKQ9P2D0 1353 aaPredicted RBP13.38□□□□□ -0.27
VPS4B-206ENST00000591475 AMPHP49418 695 aa13.37□□□□□ -0.27
VPS4B-206ENST00000591475 TTC22Q5TAA0 569 aa13.37□□□□□ -0.27
VPS4B-206ENST00000591475 SLIT3O75094 1523 aa13.37□□□□□ -0.27
VPS4B-206ENST00000591475 BAG4O95429 457 aaKnown RBP13.36□□□□□ -0.27
VPS4B-206ENST00000591475 KLHL40Q2TBA0 621 aa13.36□□□□□ -0.27
VPS4B-206ENST00000591475 HSP90AB2PQ58FF8 381 aa13.36□□□□□ -0.27
VPS4B-206ENST00000591475 NHSL1Q5SYE7 1610 aa13.36□□□□□ -0.27
VPS4B-206ENST00000591475 NFAT5O94916 1531 aa13.36□□□□□ -0.27
VPS4B-206ENST00000591475 NUCB2P80303 420 aa13.35□□□□□ -0.27
VPS4B-206ENST00000591475 CCDC173Q0VFZ6 552 aa13.35□□□□□ -0.27
VPS4B-206ENST00000591475 INTS3Q68E01 1043 aaKnown RBP13.35□□□□□ -0.27
VPS4B-206ENST00000591475 ERBB4Q15303 1308 aa13.35□□□□□ -0.27
VPS4B-206ENST00000591475 ROBO1Q9Y6N7 1651 aa13.35□□□□□ -0.27
VPS4B-206ENST00000591475 RTL1A6NKG5 1358 aa13.35□□□□□ -0.27
VPS4B-206ENST00000591475 HOXC9P31274 260 aa13.35□□□□□ -0.27
VPS4B-206ENST00000591475 HAP1P54257 671 aaPredicted RBP13.35□□□□□ -0.27
VPS4B-206ENST00000591475 LRRC59Q96AG4 307 aaKnown RBP13.35□□□□□ -0.27
VPS4B-206ENST00000591475 DDX49Q9Y6V7 483 aaKnown RBP13.35□□□□□ -0.27
VPS4B-206ENST00000591475 ARHGEF25Q86VW2 580 aa13.34□□□□□ -0.27
VPS4B-206ENST00000591475 ANKRD44Q8N8A2 993 aa13.34□□□□□ -0.27
VPS4B-206ENST00000591475 PLEKHG5O94827 1062 aa13.34□□□□□ -0.27
VPS4B-206ENST00000591475 EIF4A2Q14240 407 aaKnown RBP13.34□□□□□ -0.27
VPS4B-206ENST00000591475 CASC1Q6TDU7 716 aa13.34□□□□□ -0.27
VPS4B-206ENST00000591475 RPAP2Q8IXW5 612 aaPredicted RBP13.34□□□□□ -0.27
VPS4B-206ENST00000591475 CERKQ8TCT0 537 aa13.34□□□□□ -0.27
VPS4B-206ENST00000591475 IP6K1Q92551 441 aa13.34□□□□□ -0.27
VPS4B-206ENST00000591475 ANP32BQ92688 251 aaKnown RBP13.34□□□□□ -0.27
VPS4B-206ENST00000591475 USP26Q9BXU7 913 aa13.34□□□□□ -0.27
VPS4B-206ENST00000591475 ATP10DQ9P241 1426 aa13.33□□□□□ -0.27
VPS4B-206ENST00000591475 PEAK1Q9H792 1746 aa13.33□□□□□ -0.28
VPS4B-206ENST00000591475 UBAP1LF5GYI3 381 aa13.33□□□□□ -0.28
VPS4B-206ENST00000591475 NASPP49321 788 aaPredicted RBP13.33□□□□□ -0.28
VPS4B-206ENST00000591475 PPP1R9BQ96SB3 815 aa13.33□□□□□ -0.28
VPS4B-206ENST00000591475 MED1Q15648 1581 aaPredicted RBP13.33□□□□□ -0.28
VPS4B-206ENST00000591475 AHDC1Q5TGY3 1603 aaPredicted RBP13.32□□□□□ -0.28
VPS4B-206ENST00000591475 FAM83GA6ND36 823 aa13.32□□□□□ -0.28
VPS4B-206ENST00000591475 PIP4K2BP78356 416 aa13.32□□□□□ -0.28
VPS4B-206ENST00000591475 C16orf71Q8IYS4 520 aaPredicted RBP13.32□□□□□ -0.28
VPS4B-206ENST00000591475 CABLES1Q8TDN4 633 aa13.32□□□□□ -0.28
VPS4B-206ENST00000591475 CWC22Q9HCG8 908 aaKnown RBP13.32□□□□□ -0.28
VPS4B-206ENST00000591475 RGS12O14924 1447 aa13.31□□□□□ -0.28
VPS4B-206ENST00000591475 DCTN1Q14203 1278 aa13.31□□□□□ -0.28
VPS4B-206ENST00000591475 PHRF1Q9P1Y6 1649 aaKnown RBP13.31□□□□□ -0.28
VPS4B-206ENST00000591475 ZBTB7CA1YPR0 619 aa13.3□□□□□ -0.28
VPS4B-206ENST00000591475 ST18O60284 1047 aa13.3□□□□□ -0.28
VPS4B-206ENST00000591475 CYP2E1P05181 493 aaPredicted RBP13.3□□□□□ -0.28
VPS4B-206ENST00000591475 ZNF445P59923 1031 aa13.3□□□□□ -0.28
VPS4B-206ENST00000591475 ZC3H6P61129 1189 aaKnown RBP13.3□□□□□ -0.28
VPS4B-206ENST00000591475 MCTP1Q6DN14 999 aa13.3□□□□□ -0.28
VPS4B-206ENST00000591475 CEP85Q6P2H3 762 aa13.3□□□□□ -0.28
VPS4B-206ENST00000591475 PTPRCP08575 1304 aa13.3□□□□□ -0.28
VPS4B-206ENST00000591475 SDSP20132 328 aa13.3□□□□□ -0.28
VPS4B-206ENST00000591475 KIAA0232Q92628 1395 aa13.29□□□□□ -0.28
VPS4B-206ENST00000591475 LTN1O94822 1766 aa13.29□□□□□ -0.28
VPS4B-206ENST00000591475 CPDO75976 1380 aa13.29□□□□□ -0.28
VPS4B-206ENST00000591475 REC8O95072 547 aa13.29□□□□□ -0.28
VPS4B-206ENST00000591475 RRP9O43818 475 aaKnown RBP13.28□□□□□ -0.28
VPS4B-206ENST00000591475 GLIPR1L2Q4G1C9 344 aa13.28□□□□□ -0.28
VPS4B-206ENST00000591475 OTUD7AQ8TE49 926 aaPredicted RBP13.28□□□□□ -0.28
VPS4B-206ENST00000591475 LMBRD1Q9NUN5 540 aa13.28□□□□□ -0.28
VPS4B-206ENST00000591475 CHL1O00533 1208 aa13.27□□□□□ -0.28
VPS4B-206ENST00000591475 TPM2P07951 284 aa13.27□□□□□ -0.28
VPS4B-206ENST00000591475 NCLP19338 710 aaKnown RBP13.27□□□□□ -0.28
VPS4B-206ENST00000591475 HSP90AA2PQ14568 343 aaPredicted RBP13.27□□□□□ -0.28
VPS4B-206ENST00000591475 SULT6B1Q6IMI4 303 aa13.27□□□□□ -0.28
VPS4B-206ENST00000591475 ILDR1Q86SU0 546 aaPredicted RBP13.27□□□□□ -0.28
VPS4B-206ENST00000591475 ZSCAN30Q86W11 494 aa13.27□□□□□ -0.28
VPS4B-206ENST00000591475 IGSF1Q8N6C5 1336 aa13.27□□□□□ -0.29
VPS4B-206ENST00000591475 CRYBG1Q9Y4K1 1723 aa13.27□□□□□ -0.29
VPS4B-206ENST00000591475 SMARCA5O60264 1052 aaPredicted RBP13.27□□□□□ -0.29
VPS4B-206ENST00000591475 ZSCAN23Q3MJ62 389 aa13.27□□□□□ -0.29
VPS4B-206ENST00000591475 CAVIN1Q6NZI2 390 aaKnown RBP13.27□□□□□ -0.29
VPS4B-206ENST00000591475 EYA1Q99502 592 aa13.27□□□□□ -0.29
VPS4B-206ENST00000591475 ERC2O15083 957 aa13.26□□□□□ -0.29
VPS4B-206ENST00000591475 HMMRO75330 724 aa13.26□□□□□ -0.29
VPS4B-206ENST00000591475 LTV1Q96GA3 475 aaPredicted RBP13.26□□□□□ -0.29
VPS4B-206ENST00000591475 AXIN2Q9Y2T1 843 aa13.26□□□□□ -0.29
VPS4B-206ENST00000591475 ABCC6O95255 1503 aa13.26□□□□□ -0.29
VPS4B-206ENST00000591475 RGPD1P0DJD0 1748 aa13.25□□□□□ -0.29
VPS4B-206ENST00000591475 APBB1O00213 710 aa13.25□□□□□ -0.29
VPS4B-206ENST00000591475 KRT24Q2M2I5 525 aa13.25□□□□□ -0.29
VPS4B-206ENST00000591475 MEIS3Q99687 375 aa13.25□□□□□ -0.29
VPS4B-206ENST00000591475 TUBGCP6Q96RT7 1819 aa13.25□□□□□ -0.29
VPS4B-206ENST00000591475 KDRP35968 1356 aa13.25□□□□□ -0.29
VPS4B-206ENST00000591475 MSNP26038 577 aaKnown RBP13.25□□□□□ -0.29
VPS4B-206ENST00000591475 PKP1Q13835 747 aa13.25□□□□□ -0.29
VPS4B-206ENST00000591475 AEBP1Q8IUX7 1158 aa13.25□□□□□ -0.29
VPS4B-206ENST00000591475 ANKRD24Q8TF21 1146 aa13.25□□□□□ -0.29
VPS4B-206ENST00000591475 PRDM11Q9NQV5 511 aa13.25□□□□□ -0.29
VPS4B-206ENST00000591475 PHLPP1O60346 1717 aa13.24□□□□□ -0.29
VPS4B-206ENST00000591475 HS1BP3Q53T59 392 aa13.24□□□□□ -0.29
VPS4B-206ENST00000591475 COL16A1Q07092 1604 aaPredicted RBP13.24□□□□□ -0.29
VPS4B-206ENST00000591475 ERBB3P21860 1342 aa13.24□□□□□ -0.29
VPS4B-206ENST00000591475 PRPF40AO75400 957 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms