RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 SBF2Q86WG5 1849 aa17.79■□□□□ 0.44
VMP1-210ENST00000589823 SF3B2Q13435 895 aaKnown RBP17.79■□□□□ 0.44
VMP1-210ENST00000589823 ITGB4P16144 1822 aa17.79■□□□□ 0.44
VMP1-210ENST00000589823 BTBD11A6QL63 1104 aa17.78■□□□□ 0.44
VMP1-210ENST00000589823 WDR63Q8IWG1 891 aa17.78■□□□□ 0.44
VMP1-210ENST00000589823 LAS1LQ9Y4W2 734 aaKnown RBP17.78■□□□□ 0.44
VMP1-210ENST00000589823 PTF1AQ7RTS3 328 aa17.77■□□□□ 0.44
VMP1-210ENST00000589823 IL16Q14005 1332 aa17.76■□□□□ 0.43
VMP1-210ENST00000589823 EP400Q96L91 3159 aa17.76■□□□□ 0.43
VMP1-210ENST00000589823 APBA3O96018 575 aa17.76■□□□□ 0.43
VMP1-210ENST00000589823 CCDC125Q86Z20 511 aa17.76■□□□□ 0.43
VMP1-210ENST00000589823 TTC5Q8N0Z6 440 aa17.76■□□□□ 0.43
VMP1-210ENST00000589823 SMARCC1Q92922 1105 aaPredicted RBP17.76■□□□□ 0.43
VMP1-210ENST00000589823 BABAM1Q9NWV8 329 aa17.76■□□□□ 0.43
VMP1-210ENST00000589823 TSPYL4Q9UJ04 414 aa17.76■□□□□ 0.43
VMP1-210ENST00000589823 GNAI1P63096 354 aa17.75■□□□□ 0.43
VMP1-210ENST00000589823 CFAP44Q96MT7 982 aa17.75■□□□□ 0.43
VMP1-210ENST00000589823 IFT57Q9NWB7 429 aa17.75■□□□□ 0.43
VMP1-210ENST00000589823 ASAP1Q9ULH1 1129 aa17.75■□□□□ 0.43
VMP1-210ENST00000589823 ZNF521Q96K83 1311 aa17.74■□□□□ 0.43
VMP1-210ENST00000589823 SIPA1L3O60292 1781 aaPredicted RBP17.74■□□□□ 0.43
VMP1-210ENST00000589823 GOLGA2Q08379 1002 aa17.74■□□□□ 0.43
VMP1-210ENST00000589823 SLC39A6Q13433 755 aa17.74■□□□□ 0.43
VMP1-210ENST00000589823 YTHDC1Q96MU7 727 aaKnown RBP17.74■□□□□ 0.43
VMP1-210ENST00000589823 ATG3Q9NT62 314 aa17.74■□□□□ 0.43
VMP1-210ENST00000589823 MIS18AQ9NYP9 233 aa17.74■□□□□ 0.43
VMP1-210ENST00000589823 BTAF1O14981 1849 aa17.74■□□□□ 0.43
VMP1-210ENST00000589823 ZBED9Q6R2W3 1325 aa17.73■□□□□ 0.43
VMP1-210ENST00000589823 CHL1O00533 1208 aa17.73■□□□□ 0.43
VMP1-210ENST00000589823 ZNF790Q6PG37 636 aa17.73■□□□□ 0.43
VMP1-210ENST00000589823 PALLDQ8WX93 1383 aa17.72■□□□□ 0.43
VMP1-210ENST00000589823 TNS1Q9HBL0 1735 aaKnown RBP17.72■□□□□ 0.43
VMP1-210ENST00000589823 PLSCR1O15162 318 aa17.71■□□□□ 0.43
VMP1-210ENST00000589823 ZNF853P0CG23 659 aa17.71■□□□□ 0.43
VMP1-210ENST00000589823 BAG6P46379 1132 aa17.71■□□□□ 0.43
VMP1-210ENST00000589823 RBM42Q9BTD8 480 aaKnown RBP17.71■□□□□ 0.43
VMP1-210ENST00000589823 MYH16Q9H6N6 1097 aa17.71■□□□□ 0.43
VMP1-210ENST00000589823 PAPPAQ13219 1627 aa17.7■□□□□ 0.42
VMP1-210ENST00000589823 E9PSI1 815 aa17.7■□□□□ 0.42
VMP1-210ENST00000589823 PTCD1O75127 700 aaKnown RBP17.7■□□□□ 0.42
VMP1-210ENST00000589823 UPF1Q92900 1129 aaKnown RBP eCLIP17.7■□□□□ 0.42
VMP1-210ENST00000589823 FMNL2Q96PY5 1086 aa17.7■□□□□ 0.42
VMP1-210ENST00000589823 MBIPQ9NS73 344 aa17.7■□□□□ 0.42
VMP1-210ENST00000589823 KCNQ3O43525 872 aa17.69■□□□□ 0.42
VMP1-210ENST00000589823 KDM3BQ7LBC6 1761 aa17.68■□□□□ 0.42
VMP1-210ENST00000589823 LOC102724428A0A0B4J2F2 783 aa17.67■□□□□ 0.42
VMP1-210ENST00000589823 SIK1P57059 783 aa17.67■□□□□ 0.42
VMP1-210ENST00000589823 EIF4A1P60842 406 aaKnown RBP17.67■□□□□ 0.42
VMP1-210ENST00000589823 SLFN5Q08AF3 891 aa17.67■□□□□ 0.42
VMP1-210ENST00000589823 TSR2Q969E8 191 aaKnown RBP17.67■□□□□ 0.42
VMP1-210ENST00000589823 ZNF496Q96IT1 587 aaPredicted RBP17.67■□□□□ 0.42
VMP1-210ENST00000589823 SPINK5Q9NQ38 1064 aaPredicted RBP17.67■□□□□ 0.42
VMP1-210ENST00000589823 KCPQ6ZWJ8 1503 aa17.67■□□□□ 0.42
VMP1-210ENST00000589823 EN1Q05925 392 aaPredicted RBP17.66■□□□□ 0.42
VMP1-210ENST00000589823 SLC27A3Q5K4L6 730 aa17.66■□□□□ 0.42
VMP1-210ENST00000589823 CDCA7LQ96GN5 454 aa17.66■□□□□ 0.42
VMP1-210ENST00000589823 CCNL1Q9UK58 526 aaPredicted RBP17.66■□□□□ 0.42
VMP1-210ENST00000589823 FANCIQ9NVI1 1328 aa17.66■□□□□ 0.42
VMP1-210ENST00000589823 HEG1Q9ULI3 1381 aa17.66■□□□□ 0.42
VMP1-210ENST00000589823 ATP6V1AP38606 617 aa17.65■□□□□ 0.42
VMP1-210ENST00000589823 TXNRD1Q16881 649 aa17.65■□□□□ 0.42
VMP1-210ENST00000589823 DEFB132Q7Z7B7 95 aa17.65■□□□□ 0.42
VMP1-210ENST00000589823 VSIG10Q8N0Z9 540 aa17.65■□□□□ 0.42
VMP1-210ENST00000589823 UBR2Q8IWV8 1755 aa17.65■□□□□ 0.42
VMP1-210ENST00000589823 RGPD3A6NKT7 1758 aaPredicted RBP17.64■□□□□ 0.41
VMP1-210ENST00000589823 RGPD4Q7Z3J3 1758 aa17.64■□□□□ 0.41
VMP1-210ENST00000589823 SNRPA1P09661 255 aaKnown RBP17.64■□□□□ 0.41
VMP1-210ENST00000589823 HMGB2P26583 209 aaKnown RBP17.64■□□□□ 0.41
VMP1-210ENST00000589823 EZH2Q15910 746 aaKnown RBP17.64■□□□□ 0.41
VMP1-210ENST00000589823 CAMKK2Q96RR4 588 aa17.64■□□□□ 0.41
VMP1-210ENST00000589823 TEX13AQ9BXU3 409 aaPredicted RBP17.63■□□□□ 0.41
VMP1-210ENST00000589823 LY75O60449 1722 aa17.63■□□□□ 0.41
VMP1-210ENST00000589823 SLC4A9Q96Q91 983 aa17.62■□□□□ 0.41
VMP1-210ENST00000589823 GIGYF1O75420 1035 aaPredicted RBP17.61■□□□□ 0.41
VMP1-210ENST00000589823 KCNQ4P56696 695 aa17.61■□□□□ 0.41
VMP1-210ENST00000589823 KRT24Q2M2I5 525 aa17.61■□□□□ 0.41
VMP1-210ENST00000589823 DUSP27Q5VZP5 1158 aa17.61■□□□□ 0.41
VMP1-210ENST00000589823 DNAJC10Q8IXB1 793 aa17.61■□□□□ 0.41
VMP1-210ENST00000589823 TRMT2AQ8IZ69 625 aaKnown RBP17.61■□□□□ 0.41
VMP1-210ENST00000589823 PROM2Q8N271 834 aa17.61■□□□□ 0.41
VMP1-210ENST00000589823 ELL2O00472 640 aaPredicted RBP17.6■□□□□ 0.41
VMP1-210ENST00000589823 STARD3NLO95772 234 aa17.6■□□□□ 0.41
VMP1-210ENST00000589823 HOXB7P09629 217 aa17.6■□□□□ 0.41
VMP1-210ENST00000589823 EXOSC9Q06265 439 aaKnown RBP17.6■□□□□ 0.41
VMP1-210ENST00000589823 ITPK1Q13572 414 aa17.6■□□□□ 0.41
VMP1-210ENST00000589823 LRRC4BQ9NT99 713 aa17.6■□□□□ 0.41
VMP1-210ENST00000589823 SOS1Q07889 1333 aaPredicted RBP17.6■□□□□ 0.41
VMP1-210ENST00000589823 ZNF831Q5JPB2 1677 aa17.6■□□□□ 0.41
VMP1-210ENST00000589823 TWISTNBQ3B726 338 aaPredicted RBP17.59■□□□□ 0.41
VMP1-210ENST00000589823 C8orf58Q8NAV2 365 aa17.59■□□□□ 0.41
VMP1-210ENST00000589823 CHMP4AQ9BY43 222 aa17.59■□□□□ 0.41
VMP1-210ENST00000589823 PRAMEF22A3QJZ6 481 aa17.58■□□□□ 0.4
VMP1-210ENST00000589823 USP16Q9Y5T5 823 aa17.58■□□□□ 0.4
VMP1-210ENST00000589823 CICQ96RK0 1608 aaPredicted RBP17.58■□□□□ 0.4
VMP1-210ENST00000589823 CYP19A1P11511 503 aaPredicted RBP17.57■□□□□ 0.4
VMP1-210ENST00000589823 EIF2S2P20042 333 aaKnown RBP17.57■□□□□ 0.4
VMP1-210ENST00000589823 TSPYL6Q8N831 410 aa17.57■□□□□ 0.4
VMP1-210ENST00000589823 LINC00116Q8NCU8 138 aa17.57■□□□□ 0.4
VMP1-210ENST00000589823 TJP1Q07157 1748 aa17.57■□□□□ 0.4
VMP1-210ENST00000589823 HDGFL1Q5TGJ6 251 aa17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms