RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 IFNL2Q8IZJ0 200 aa13.69□□□□□ -0.22
VPS4B-204ENST00000589604 LGR6Q9HBX8 967 aa13.69□□□□□ -0.22
VPS4B-204ENST00000589604 GTF3C3Q9Y5Q9 886 aa13.69□□□□□ -0.22
VPS4B-204ENST00000589604 VIRMAQ69YN4 1812 aaKnown RBP13.68□□□□□ -0.22
VPS4B-204ENST00000589604 MYCNP04198 464 aaPredicted RBP13.68□□□□□ -0.22
VPS4B-204ENST00000589604 RIPK4P57078 832 aa13.68□□□□□ -0.22
VPS4B-204ENST00000589604 MPRIPQ6WCQ1 1025 aa13.68□□□□□ -0.22
VPS4B-204ENST00000589604 UPF1Q92900 1129 aaKnown RBP eCLIP13.68□□□□□ -0.22
VPS4B-204ENST00000589604 ITGB4P16144 1822 aa13.68□□□□□ -0.22
VPS4B-204ENST00000589604 SCN11AQ9UI33 1791 aa13.67□□□□□ -0.22
VPS4B-204ENST00000589604 TULP1O00294 542 aaPredicted RBP13.67□□□□□ -0.22
VPS4B-204ENST00000589604 PRIM1P49642 420 aaKnown RBP13.67□□□□□ -0.22
VPS4B-204ENST00000589604 SUPT16HQ9Y5B9 1047 aaKnown RBP13.67□□□□□ -0.22
VPS4B-204ENST00000589604 E9PSI1 815 aa13.66□□□□□ -0.22
VPS4B-204ENST00000589604 AKAP4Q5JQC9 854 aa13.66□□□□□ -0.22
VPS4B-204ENST00000589604 RNF123Q5XPI4 1314 aa13.66□□□□□ -0.22
VPS4B-204ENST00000589604 MAP3K5Q99683 1374 aa13.66□□□□□ -0.22
VPS4B-204ENST00000589604 BTAF1O14981 1849 aa13.66□□□□□ -0.22
VPS4B-204ENST00000589604 IL17REQ8NFR9 667 aa13.66□□□□□ -0.22
VPS4B-204ENST00000589604 DCTN1Q14203 1278 aa13.65□□□□□ -0.22
VPS4B-204ENST00000589604 C1orf141Q5JVX7 400 aa13.65□□□□□ -0.22
VPS4B-204ENST00000589604 GAS2L2Q8NHY3 880 aa13.65□□□□□ -0.22
VPS4B-204ENST00000589604 KAT6BQ8WYB5 2073 aa13.64□□□□□ -0.23
VPS4B-204ENST00000589604 RNMTO43148 476 aaKnown RBP13.64□□□□□ -0.23
VPS4B-204ENST00000589604 DCAF5Q96JK2 942 aa13.64□□□□□ -0.23
VPS4B-204ENST00000589604 IL16Q14005 1332 aa13.64□□□□□ -0.23
VPS4B-204ENST00000589604 GNAT3A8MTJ3 354 aa13.63□□□□□ -0.23
VPS4B-204ENST00000589604 MCM10Q7L590 875 aa13.63□□□□□ -0.23
VPS4B-204ENST00000589604 BCL11BQ9C0K0 894 aaPredicted RBP13.63□□□□□ -0.23
VPS4B-204ENST00000589604 MRC1P22897 1456 aa13.63□□□□□ -0.23
VPS4B-204ENST00000589604 SIPA1L3O60292 1781 aaPredicted RBP13.63□□□□□ -0.23
VPS4B-204ENST00000589604 NEFMP07197 916 aa13.63□□□□□ -0.23
VPS4B-204ENST00000589604 PIGBQ92521 554 aa13.63□□□□□ -0.23
VPS4B-204ENST00000589604 SYTL4Q96C24 671 aaPredicted RBP13.63□□□□□ -0.23
VPS4B-204ENST00000589604 THUMPD2Q9BTF0 503 aaKnown RBP13.63□□□□□ -0.23
VPS4B-204ENST00000589604 CEMIPQ8WUJ3 1361 aa13.62□□□□□ -0.23
VPS4B-204ENST00000589604 ERVV-2B6SEH9 535 aa13.61□□□□□ -0.23
VPS4B-204ENST00000589604 HSP90AB1P08238 724 aaKnown RBP13.61□□□□□ -0.23
VPS4B-204ENST00000589604 DEFB132Q7Z7B7 95 aa13.61□□□□□ -0.23
VPS4B-204ENST00000589604 RCAN3Q9UKA8 241 aa13.61□□□□□ -0.23
VPS4B-204ENST00000589604 NFATC2IPQ8NCF5 419 aa13.6□□□□□ -0.23
VPS4B-204ENST00000589604 APBA3O96018 575 aa13.59□□□□□ -0.23
VPS4B-204ENST00000589604 ZNF853P0CG23 659 aa13.59□□□□□ -0.23
VPS4B-204ENST00000589604 SLC52A2Q9HAB3 445 aa13.59□□□□□ -0.23
VPS4B-204ENST00000589604 ASAP1Q9ULH1 1129 aa13.59□□□□□ -0.23
VPS4B-204ENST00000589604 PAPPAQ13219 1627 aa13.59□□□□□ -0.23
VPS4B-204ENST00000589604 CABP4P57796 275 aa13.59□□□□□ -0.23
VPS4B-204ENST00000589604 PROM2Q8N271 834 aa13.59□□□□□ -0.23
VPS4B-204ENST00000589604 TMOD3Q9NYL9 352 aa13.59□□□□□ -0.23
VPS4B-204ENST00000589604 FANCIQ9NVI1 1328 aa13.58□□□□□ -0.24
VPS4B-204ENST00000589604 HTATSF1O43719 755 aaKnown RBP13.58□□□□□ -0.24
VPS4B-204ENST00000589604 EN1Q05925 392 aaPredicted RBP13.58□□□□□ -0.24
VPS4B-204ENST00000589604 LMOD3Q0VAK6 560 aa13.58□□□□□ -0.24
VPS4B-204ENST00000589604 CAMKK2Q96RR4 588 aa13.58□□□□□ -0.24
VPS4B-204ENST00000589604 LY75O60449 1722 aa13.58□□□□□ -0.24
VPS4B-204ENST00000589604 KCNQ4P56696 695 aa13.57□□□□□ -0.24
VPS4B-204ENST00000589604 TSR2Q969E8 191 aaKnown RBP13.57□□□□□ -0.24
VPS4B-204ENST00000589604 MYH16Q9H6N6 1097 aa13.57□□□□□ -0.24
VPS4B-204ENST00000589604 ATG3Q9NT62 314 aa13.57□□□□□ -0.24
VPS4B-204ENST00000589604 SLC39A6Q13433 755 aa13.56□□□□□ -0.24
VPS4B-204ENST00000589604 EZH2Q15910 746 aaKnown RBP13.56□□□□□ -0.24
VPS4B-204ENST00000589604 CCDC125Q86Z20 511 aa13.56□□□□□ -0.24
VPS4B-204ENST00000589604 RTF1Q92541 710 aaKnown RBP13.56□□□□□ -0.24
VPS4B-204ENST00000589604 RREB1Q92766 1687 aa13.56□□□□□ -0.24
VPS4B-204ENST00000589604 KCNQ3O43525 872 aa13.56□□□□□ -0.24
VPS4B-204ENST00000589604 SLC4A9Q96Q91 983 aa13.56□□□□□ -0.24
VPS4B-204ENST00000589604 IFT57Q9NWB7 429 aa13.56□□□□□ -0.24
VPS4B-204ENST00000589604 MIS18AQ9NYP9 233 aa13.56□□□□□ -0.24
VPS4B-204ENST00000589604 RGPD3A6NKT7 1758 aaPredicted RBP13.55□□□□□ -0.24
VPS4B-204ENST00000589604 RGPD4Q7Z3J3 1758 aa13.55□□□□□ -0.24
VPS4B-204ENST00000589604 PLSCR1O15162 318 aa13.55□□□□□ -0.24
VPS4B-204ENST00000589604 MSH5O43196 834 aa13.55□□□□□ -0.24
VPS4B-204ENST00000589604 LRRC4BQ9NT99 713 aa13.55□□□□□ -0.24
VPS4B-204ENST00000589604 KCPQ6ZWJ8 1503 aa13.55□□□□□ -0.24
VPS4B-204ENST00000589604 PALLDQ8WX93 1383 aa13.55□□□□□ -0.24
VPS4B-204ENST00000589604 UBR2Q8IWV8 1755 aa13.54□□□□□ -0.24
VPS4B-204ENST00000589604 CALD1Q05682 793 aaKnown RBP13.54□□□□□ -0.24
VPS4B-204ENST00000589604 TEFQ10587 303 aa13.54□□□□□ -0.24
VPS4B-204ENST00000589604 CFAP44Q96MT7 982 aa13.54□□□□□ -0.24
VPS4B-204ENST00000589604 KDM3BQ7LBC6 1761 aa13.54□□□□□ -0.24
VPS4B-204ENST00000589604 NUP188Q5SRE5 1749 aa13.54□□□□□ -0.24
VPS4B-204ENST00000589604 BAG6P46379 1132 aa13.53□□□□□ -0.24
VPS4B-204ENST00000589604 RRP1P56182 461 aaKnown RBP13.53□□□□□ -0.24
VPS4B-204ENST00000589604 GNAI1P63096 354 aa13.53□□□□□ -0.24
VPS4B-204ENST00000589604 IRX6P78412 446 aaPredicted RBP13.53□□□□□ -0.24
VPS4B-204ENST00000589604 EXOSC9Q06265 439 aaKnown RBP13.53□□□□□ -0.24
VPS4B-204ENST00000589604 MAPK8IP2Q13387 824 aaPredicted RBP13.53□□□□□ -0.24
VPS4B-204ENST00000589604 SF3B2Q13435 895 aaKnown RBP13.53□□□□□ -0.24
VPS4B-204ENST00000589604 CHL1O00533 1208 aa13.53□□□□□ -0.24
VPS4B-204ENST00000589604 TXNRD1Q16881 649 aa13.53□□□□□ -0.24
VPS4B-204ENST00000589604 MBIPQ9NS73 344 aa13.53□□□□□ -0.24
VPS4B-204ENST00000589604 TAF7Q15545 349 aaPredicted RBP13.52□□□□□ -0.25
VPS4B-204ENST00000589604 FBXO3Q9UK99 471 aa13.52□□□□□ -0.25
VPS4B-204ENST00000589604 TJP1Q07157 1748 aa13.51□□□□□ -0.25
VPS4B-204ENST00000589604 BTBD11A6QL63 1104 aa13.51□□□□□ -0.25
VPS4B-204ENST00000589604 PTCD1O75127 700 aaKnown RBP13.51□□□□□ -0.25
VPS4B-204ENST00000589604 BCAR3O75815 825 aa13.51□□□□□ -0.25
VPS4B-204ENST00000589604 RARSP54136 660 aaKnown RBP13.51□□□□□ -0.25
VPS4B-204ENST00000589604 ITPK1Q13572 414 aa13.51□□□□□ -0.25
VPS4B-204ENST00000589604 ERICH6Q7L0X2 663 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms