RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 TSKSQ9UJT2 592 aa6.02□□□□□ -1.45
LIG3-211ENST00000588713 EXOC5O00471 708 aa6.01□□□□□ -1.45
LIG3-211ENST00000588713 SLC27A3Q5K4L6 730 aa6.01□□□□□ -1.45
LIG3-211ENST00000588713 TMEM132EQ6IEE7 984 aa6.01□□□□□ -1.45
LIG3-211ENST00000588713 C3orf67Q6ZVT6 689 aa6.01□□□□□ -1.45
LIG3-211ENST00000588713 SPOCK2Q92563 424 aa6.01□□□□□ -1.45
LIG3-211ENST00000588713 L3MBTL3Q96JM7 780 aaPredicted RBP6.01□□□□□ -1.45
LIG3-211ENST00000588713 LMO7Q8WWI1 1683 aa6.01□□□□□ -1.45
LIG3-211ENST00000588713 FCHSD2O94868 740 aa6□□□□□ -1.45
LIG3-211ENST00000588713 VEGFAP15692 232 aaPredicted RBP6□□□□□ -1.45
LIG3-211ENST00000588713 DGKZQ13574 1117 aa6□□□□□ -1.45
LIG3-211ENST00000588713 SMIM5Q71RC9 77 aa6□□□□□ -1.45
LIG3-211ENST00000588713 BEGAINQ9BUH8 593 aa6□□□□□ -1.45
LIG3-211ENST00000588713 CDCA7Q9BWT1 371 aaPredicted RBP6□□□□□ -1.45
LIG3-211ENST00000588713 PKD1L3Q7Z443 1732 aa5.99□□□□□ -1.45
LIG3-211ENST00000588713 ZNF316A6NFI3 1004 aaPredicted RBP5.99□□□□□ -1.45
LIG3-211ENST00000588713 FXR1P51114 621 aaKnown RBP eCLIP5.99□□□□□ -1.45
LIG3-211ENST00000588713 MAP2K1Q02750 393 aaPredicted RBP5.99□□□□□ -1.45
LIG3-211ENST00000588713 PDAP1Q13442 181 aaKnown RBP5.99□□□□□ -1.45
LIG3-211ENST00000588713 IFNLR1Q8IU57 520 aaPredicted RBP5.99□□□□□ -1.45
LIG3-211ENST00000588713 PDCD7Q8N8D1 485 aaKnown RBP5.99□□□□□ -1.45
LIG3-211ENST00000588713 BTAF1O14981 1849 aa5.99□□□□□ -1.45
LIG3-211ENST00000588713 TRPM1Q7Z4N2 1603 aa5.99□□□□□ -1.45
LIG3-211ENST00000588713 ANKARQ7Z5J8 1434 aa5.99□□□□□ -1.45
LIG3-211ENST00000588713 PIK3C2AO00443 1686 aa5.98□□□□□ -1.45
LIG3-211ENST00000588713 NUP155O75694 1391 aa5.98□□□□□ -1.45
LIG3-211ENST00000588713 CPDO75976 1380 aa5.98□□□□□ -1.45
LIG3-211ENST00000588713 ABCC11Q96J66 1382 aa5.98□□□□□ -1.45
LIG3-211ENST00000588713 A0A0G2JLW4 131 aa5.98□□□□□ -1.45
LIG3-211ENST00000588713 CSB-PGBD3P0DP91 1061 aa5.98□□□□□ -1.45
LIG3-211ENST00000588713 NBPF15Q8N660 670 aa5.98□□□□□ -1.45
LIG3-211ENST00000588713 SYTL4Q96C24 671 aaPredicted RBP5.98□□□□□ -1.45
LIG3-211ENST00000588713 TMEM121BQ9BXQ6 578 aaPredicted RBP5.98□□□□□ -1.45
LIG3-211ENST00000588713 CCNL1Q9UK58 526 aaPredicted RBP5.98□□□□□ -1.45
LIG3-211ENST00000588713 WNK3Q9BYP7 1800 aa5.97□□□□□ -1.45
LIG3-211ENST00000588713 GRM1Q13255 1194 aa5.97□□□□□ -1.45
LIG3-211ENST00000588713 MARVELD3Q96A59 401 aa5.97□□□□□ -1.45
LIG3-211ENST00000588713 PRR36Q9H6K5 1346 aa5.97□□□□□ -1.45
LIG3-211ENST00000588713 G3V3G9 751 aa5.96□□□□□ -1.46
LIG3-211ENST00000588713 PHF14O94880 888 aa5.96□□□□□ -1.46
LIG3-211ENST00000588713 PAXIP1Q6ZW49 1069 aaPredicted RBP5.96□□□□□ -1.46
LIG3-211ENST00000588713 ABTB2Q8N961 1025 aa5.96□□□□□ -1.46
LIG3-211ENST00000588713 PRAM1Q96QH2 718 aa5.96□□□□□ -1.46
LIG3-211ENST00000588713 CABP2Q9NPB3 220 aa5.96□□□□□ -1.46
LIG3-211ENST00000588713 KNDC1Q76NI1 1749 aa5.96□□□□□ -1.46
LIG3-211ENST00000588713 WDR17Q8IZU2 1322 aa5.96□□□□□ -1.46
LIG3-211ENST00000588713 WDR33Q9C0J8 1336 aaKnown RBP5.96□□□□□ -1.46
LIG3-211ENST00000588713 GLTPD2A6NH11 291 aa5.95□□□□□ -1.46
LIG3-211ENST00000588713 TMEM88BA6NKF7 163 aa5.95□□□□□ -1.46
LIG3-211ENST00000588713 DPEP1P16444 411 aa5.95□□□□□ -1.46
LIG3-211ENST00000588713 KANK4Q5T7N3 995 aaPredicted RBP5.95□□□□□ -1.46
LIG3-211ENST00000588713 YTHDC2Q9H6S0 1430 aaKnown RBP5.95□□□□□ -1.46
LIG3-211ENST00000588713 ADGRF5Q8IZF2 1346 aa5.95□□□□□ -1.46
LIG3-211ENST00000588713 VPS8Q8N3P4 1428 aa5.94□□□□□ -1.46
LIG3-211ENST00000588713 N4BP2Q86UW6 1770 aaPredicted RBP5.94□□□□□ -1.46
LIG3-211ENST00000588713 GCP02774 474 aa5.94□□□□□ -1.46
LIG3-211ENST00000588713 DEFB115Q30KQ5 88 aa5.94□□□□□ -1.46
LIG3-211ENST00000588713 DPY19L2Q6NUT2 758 aa5.94□□□□□ -1.46
LIG3-211ENST00000588713 POGKQ9P215 609 aa5.94□□□□□ -1.46
LIG3-211ENST00000588713 VIRMAQ69YN4 1812 aaKnown RBP5.94□□□□□ -1.46
LIG3-211ENST00000588713 ERBB3P21860 1342 aa5.94□□□□□ -1.46
LIG3-211ENST00000588713 MINK1Q8N4C8 1332 aaPredicted RBP5.94□□□□□ -1.46
LIG3-211ENST00000588713 PPIP5K1Q6PFW1 1433 aa5.93□□□□□ -1.46
LIG3-211ENST00000588713 SPATA31E1Q6ZUB1 1445 aa5.93□□□□□ -1.46
LIG3-211ENST00000588713 KIF1BO60333 1816 aa5.93□□□□□ -1.46
LIG3-211ENST00000588713 TGFB2P61812 414 aa5.93□□□□□ -1.46
LIG3-211ENST00000588713 RASSF7Q02833 373 aa5.93□□□□□ -1.46
LIG3-211ENST00000588713 FLAD1Q8NFF5 587 aa5.93□□□□□ -1.46
LIG3-211ENST00000588713 ABT1Q9ULW3 272 aaKnown RBP5.93□□□□□ -1.46
LIG3-211ENST00000588713 ABCC6O95255 1503 aa5.93□□□□□ -1.46
LIG3-211ENST00000588713 RPGRIP1LQ68CZ1 1315 aa5.93□□□□□ -1.46
LIG3-211ENST00000588713 COL18A1P39060 1754 aa5.93□□□□□ -1.46
LIG3-211ENST00000588713 RASSF10A6NK89 507 aa5.92□□□□□ -1.46
LIG3-211ENST00000588713 POTECB2RU33 542 aa5.92□□□□□ -1.46
LIG3-211ENST00000588713 EMP3P54852 163 aa5.92□□□□□ -1.46
LIG3-211ENST00000588713 CARD10Q9BWT7 1032 aa5.92□□□□□ -1.46
LIG3-211ENST00000588713 AXIN2Q9Y2T1 843 aa5.92□□□□□ -1.46
LIG3-211ENST00000588713 PASKQ96RG2 1323 aa5.92□□□□□ -1.46
LIG3-211ENST00000588713 EIF3AQ14152 1382 aaKnown RBP5.92□□□□□ -1.46
LIG3-211ENST00000588713 MMP10P09238 476 aa5.91□□□□□ -1.46
LIG3-211ENST00000588713 FAM50AQ14320 339 aaKnown RBP5.91□□□□□ -1.46
LIG3-211ENST00000588713 DALRD3Q5D0E6 543 aaKnown RBP5.91□□□□□ -1.46
LIG3-211ENST00000588713 NLRP13Q86W25 1043 aa5.91□□□□□ -1.46
LIG3-211ENST00000588713 AMIGO3Q86WK7 504 aa5.91□□□□□ -1.46
LIG3-211ENST00000588713 DDX54Q8TDD1 881 aaKnown RBP5.91□□□□□ -1.46
LIG3-211ENST00000588713 DCAF5Q96JK2 942 aa5.91□□□□□ -1.46
LIG3-211ENST00000588713 AK7Q96M32 723 aa5.91□□□□□ -1.46
LIG3-211ENST00000588713 BOLA1Q9Y3E2 137 aa5.91□□□□□ -1.46
LIG3-211ENST00000588713 KAT6BQ8WYB5 2073 aa5.9□□□□□ -1.46
LIG3-211ENST00000588713 PPLO60437 1756 aa5.9□□□□□ -1.46
LIG3-211ENST00000588713 SOX12O15370 315 aa5.9□□□□□ -1.46
LIG3-211ENST00000588713 PRIM1P49642 420 aaKnown RBP5.9□□□□□ -1.46
LIG3-211ENST00000588713 SIRT1Q96EB6 747 aa5.9□□□□□ -1.46
LIG3-211ENST00000588713 CAPNS2Q96L46 248 aa5.9□□□□□ -1.46
LIG3-211ENST00000588713 GPR101Q96P66 508 aaPredicted RBP5.9□□□□□ -1.46
LIG3-211ENST00000588713 ZC3H4Q9UPT8 1303 aaKnown RBP5.9□□□□□ -1.47
LIG3-211ENST00000588713 ITSN1Q15811 1721 aa5.9□□□□□ -1.47
LIG3-211ENST00000588713 KIAA1551Q9HCM1 1747 aa5.9□□□□□ -1.47
LIG3-211ENST00000588713 CCDC7Q96M83 1385 aa5.9□□□□□ -1.47
LIG3-211ENST00000588713 QRICH2Q9H0J4 1663 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms