RNA–Protein interactions for RNA: ENST00000584944.5

TRAF4-215, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 825 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-215ENST00000584944 PHACTR3Q96KR7 559 aa18.27■□□□□ 0.52
TRAF4-215ENST00000584944 TMOD3Q9NYL9 352 aa18.27■□□□□ 0.52
TRAF4-215ENST00000584944 UTRNP46939 3433 aa18.26■□□□□ 0.51
TRAF4-215ENST00000584944 PRIM1P49642 420 aaKnown RBP18.26■□□□□ 0.51
TRAF4-215ENST00000584944 CABP4P57796 275 aa18.26■□□□□ 0.51
TRAF4-215ENST00000584944 MPRIPQ6WCQ1 1025 aa18.26■□□□□ 0.51
TRAF4-215ENST00000584944 MAP3K5Q99683 1374 aa18.26■□□□□ 0.51
TRAF4-215ENST00000584944 PNISRQ8TF01 805 aaKnown RBP18.25■□□□□ 0.51
TRAF4-215ENST00000584944 SHANK3Q9BYB0 1731 aa18.25■□□□□ 0.51
TRAF4-215ENST00000584944 LMOD3Q0VAK6 560 aa18.24■□□□□ 0.51
TRAF4-215ENST00000584944 TEFQ10587 303 aa18.24■□□□□ 0.51
TRAF4-215ENST00000584944 NKX1-1Q15270 411 aaPredicted RBP18.24■□□□□ 0.51
TRAF4-215ENST00000584944 NEUROD2Q15784 382 aa18.24■□□□□ 0.51
TRAF4-215ENST00000584944 NFE2L2Q16236 605 aa18.24■□□□□ 0.51
TRAF4-215ENST00000584944 ARXQ96QS3 562 aa18.24■□□□□ 0.51
TRAF4-215ENST00000584944 ERVV-2B6SEH9 535 aa18.23■□□□□ 0.51
TRAF4-215ENST00000584944 RIPK4P57078 832 aa18.22■□□□□ 0.51
TRAF4-215ENST00000584944 SLC16A10Q8TF71 515 aa18.22■□□□□ 0.51
TRAF4-215ENST00000584944 PLEKHF1Q96S99 279 aa18.22■□□□□ 0.51
TRAF4-215ENST00000584944 QSER1Q2KHR3 1735 aa18.22■□□□□ 0.51
TRAF4-215ENST00000584944 DOT1LQ8TEK3 1739 aa18.22■□□□□ 0.51
TRAF4-215ENST00000584944 KCNQ4P56696 695 aa18.21■□□□□ 0.51
TRAF4-215ENST00000584944 PNPLA7Q6ZV29 1317 aa18.21■□□□□ 0.51
TRAF4-215ENST00000584944 LY75O60449 1722 aa18.2■□□□□ 0.5
TRAF4-215ENST00000584944 RNMTO43148 476 aaKnown RBP18.2■□□□□ 0.5
TRAF4-215ENST00000584944 HTATSF1O43719 755 aaKnown RBP18.2■□□□□ 0.5
TRAF4-215ENST00000584944 RRP7AQ9Y3A4 280 aaKnown RBP18.2■□□□□ 0.5
TRAF4-215ENST00000584944 SMARCC1Q92922 1105 aaPredicted RBP18.19■□□□□ 0.5
TRAF4-215ENST00000584944 APAF1O14727 1248 aa18.18■□□□□ 0.5
TRAF4-215ENST00000584944 TMPOP42166 694 aaKnown RBP18.18■□□□□ 0.5
TRAF4-215ENST00000584944 NFATC2IPQ8NCF5 419 aa18.18■□□□□ 0.5
TRAF4-215ENST00000584944 TFCP2L1Q9NZI6 479 aa18.18■□□□□ 0.5
TRAF4-215ENST00000584944 TUBGCP6Q96RT7 1819 aa18.18■□□□□ 0.5
TRAF4-215ENST00000584944 COL24A1Q17RW2 1714 aa18.18■□□□□ 0.5
TRAF4-215ENST00000584944 MCM10Q7L590 875 aa18.17■□□□□ 0.5
TRAF4-215ENST00000584944 SLC52A2Q9HAB3 445 aa18.17■□□□□ 0.5
TRAF4-215ENST00000584944 LGR6Q9HBX8 967 aa18.17■□□□□ 0.5
TRAF4-215ENST00000584944 HMGB2P26583 209 aaKnown RBP18.16■□□□□ 0.5
TRAF4-215ENST00000584944 TTC5Q8N0Z6 440 aa18.16■□□□□ 0.5
TRAF4-215ENST00000584944 PIGBQ92521 554 aa18.16■□□□□ 0.5
TRAF4-215ENST00000584944 CCNL1Q9UK58 526 aaPredicted RBP18.16■□□□□ 0.5
TRAF4-215ENST00000584944 KDM6AO15550 1401 aaPredicted RBP18.15■□□□□ 0.5
TRAF4-215ENST00000584944 CALD1Q05682 793 aaKnown RBP18.15■□□□□ 0.5
TRAF4-215ENST00000584944 CHD4Q14839 1912 aa18.15■□□□□ 0.5
TRAF4-215ENST00000584944 POLD1P28340 1107 aa18.14■□□□□ 0.49
TRAF4-215ENST00000584944 DCTN1Q14203 1278 aa18.14■□□□□ 0.49
TRAF4-215ENST00000584944 ZNF784Q8NCA9 323 aaPredicted RBP18.14■□□□□ 0.49
TRAF4-215ENST00000584944 IL17REQ8NFR9 667 aa18.13■□□□□ 0.49
TRAF4-215ENST00000584944 BTBD11A6QL63 1104 aa18.12■□□□□ 0.49
TRAF4-215ENST00000584944 RBM42Q9BTD8 480 aaKnown RBP18.12■□□□□ 0.49
TRAF4-215ENST00000584944 SALL2Q9Y467 1007 aaPredicted RBP18.12■□□□□ 0.49
TRAF4-215ENST00000584944 PALLDQ8WX93 1383 aa18.12■□□□□ 0.49
TRAF4-215ENST00000584944 SENP3-EIF4A1A0A087X0R7 540 aa18.11■□□□□ 0.49
TRAF4-215ENST00000584944 COL23A1Q86Y22 540 aaPredicted RBP18.11■□□□□ 0.49
TRAF4-215ENST00000584944 LAS1LQ9Y4W2 734 aaKnown RBP18.11■□□□□ 0.49
TRAF4-215ENST00000584944 PTCD1O75127 700 aaKnown RBP18.1■□□□□ 0.49
TRAF4-215ENST00000584944 TAF7Q15545 349 aaPredicted RBP18.1■□□□□ 0.49
TRAF4-215ENST00000584944 NGEFQ8N5V2 710 aa18.1■□□□□ 0.49
TRAF4-215ENST00000584944 THUMPD2Q9BTF0 503 aaKnown RBP18.1■□□□□ 0.49
TRAF4-215ENST00000584944 ASAP1Q9ULH1 1129 aa18.1■□□□□ 0.49
TRAF4-215ENST00000584944 CEMIPQ8WUJ3 1361 aa18.09■□□□□ 0.49
TRAF4-215ENST00000584944 GPR162Q16538 588 aa18.09■□□□□ 0.49
TRAF4-215ENST00000584944 KLHL34Q8N239 644 aa18.09■□□□□ 0.49
TRAF4-215ENST00000584944 SCN11AQ9UI33 1791 aa18.09■□□□□ 0.49
TRAF4-215ENST00000584944 TOGARAM1Q9Y4F4 1720 aa18.09■□□□□ 0.49
TRAF4-215ENST00000584944 GOLGB1Q14789 3259 aaKnown RBP18.08■□□□□ 0.49
TRAF4-215ENST00000584944 ATG3Q9NT62 314 aa18.08■□□□□ 0.48
TRAF4-215ENST00000584944 C5P01031 1676 aa18.07■□□□□ 0.48
TRAF4-215ENST00000584944 ATP6V1AP38606 617 aa18.07■□□□□ 0.48
TRAF4-215ENST00000584944 SLC39A6Q13433 755 aa18.07■□□□□ 0.48
TRAF4-215ENST00000584944 NLGN2Q8NFZ4 835 aa18.07■□□□□ 0.48
TRAF4-215ENST00000584944 ITGB4P16144 1822 aa18.07■□□□□ 0.48
TRAF4-215ENST00000584944 LOC102724428A0A0B4J2F2 783 aa18.06■□□□□ 0.48
TRAF4-215ENST00000584944 MSH5O43196 834 aa18.06■□□□□ 0.48
TRAF4-215ENST00000584944 SIK1P57059 783 aa18.06■□□□□ 0.48
TRAF4-215ENST00000584944 ZNF790Q6PG37 636 aa18.06■□□□□ 0.48
TRAF4-215ENST00000584944 TSPYL4Q9UJ04 414 aa18.06■□□□□ 0.48
TRAF4-215ENST00000584944 TAF1LQ8IZX4 1826 aa18.06■□□□□ 0.48
TRAF4-215ENST00000584944 MRC1P22897 1456 aa18.06■□□□□ 0.48
TRAF4-215ENST00000584944 TRIM35Q9UPQ4 493 aa18.05■□□□□ 0.48
TRAF4-215ENST00000584944 CCDC27Q2M243 656 aa18.04■□□□□ 0.48
TRAF4-215ENST00000584944 FLAD1Q8NFF5 587 aa18.04■□□□□ 0.48
TRAF4-215ENST00000584944 FMNL2Q96PY5 1086 aa18.04■□□□□ 0.48
TRAF4-215ENST00000584944 MIS18AQ9NYP9 233 aa18.04■□□□□ 0.48
TRAF4-215ENST00000584944 DLG5Q8TDM6 1919 aa18.04■□□□□ 0.48
TRAF4-215ENST00000584944 GNAI1P63096 354 aa18.03■□□□□ 0.48
TRAF4-215ENST00000584944 MSL1Q68DK7 614 aa18.03■□□□□ 0.48
TRAF4-215ENST00000584944 NCBP3Q53F19 620 aaKnown RBP18.02■□□□□ 0.48
TRAF4-215ENST00000584944 WWC1Q8IX03 1113 aa18.02■□□□□ 0.48
TRAF4-215ENST00000584944 PELP1Q8IZL8 1130 aaKnown RBP18.02■□□□□ 0.48
TRAF4-215ENST00000584944 BABAM1Q9NWV8 329 aa18.02■□□□□ 0.48
TRAF4-215ENST00000584944 ADAMTS7Q9UKP4 1686 aa18.02■□□□□ 0.47
TRAF4-215ENST00000584944 HNRNPUQ00839 825 aaKnown RBP eCLIP18.01■□□□□ 0.47
TRAF4-215ENST00000584944 NPM2Q86SE8 214 aaKnown RBP18.01■□□□□ 0.47
TRAF4-215ENST00000584944 AK7Q96M32 723 aa18.01■□□□□ 0.47
TRAF4-215ENST00000584944 TEX13AQ9BXU3 409 aaPredicted RBP18.01■□□□□ 0.47
TRAF4-215ENST00000584944 C4BP0C0L5 1744 aa18.01■□□□□ 0.47
TRAF4-215ENST00000584944 STARD3NLO95772 234 aa18■□□□□ 0.47
TRAF4-215ENST00000584944 AMIGO3Q86WK7 504 aa18■□□□□ 0.47
TRAF4-215ENST00000584944 CFAP44Q96MT7 982 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms