RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 TAF7Q15545 349 aaPredicted RBP14.29□□□□□ -0.12
TOP3A-216ENST00000583804 PTF1AQ7RTS3 328 aa14.29□□□□□ -0.12
TOP3A-216ENST00000583804 BTBD11A6QL63 1104 aa14.28□□□□□ -0.12
TOP3A-216ENST00000583804 BCL11BQ9C0K0 894 aaPredicted RBP14.28□□□□□ -0.12
TOP3A-216ENST00000583804 MIS18AQ9NYP9 233 aa14.28□□□□□ -0.12
TOP3A-216ENST00000583804 DOT1LQ8TEK3 1739 aa14.27□□□□□ -0.12
TOP3A-216ENST00000583804 WDR63Q8IWG1 891 aa14.27□□□□□ -0.12
TOP3A-216ENST00000583804 PIAS4Q8N2W9 510 aaPredicted RBP14.27□□□□□ -0.12
TOP3A-216ENST00000583804 SCN11AQ9UI33 1791 aa14.27□□□□□ -0.13
TOP3A-216ENST00000583804 TOGARAM1Q9Y4F4 1720 aa14.27□□□□□ -0.13
TOP3A-216ENST00000583804 GOLGA2Q08379 1002 aa14.25□□□□□ -0.13
TOP3A-216ENST00000583804 SLC39A6Q13433 755 aa14.25□□□□□ -0.13
TOP3A-216ENST00000583804 TSPYL4Q9UJ04 414 aa14.25□□□□□ -0.13
TOP3A-216ENST00000583804 ASAP1Q9ULH1 1129 aa14.25□□□□□ -0.13
TOP3A-216ENST00000583804 ADAMTS7Q9UKP4 1686 aa14.25□□□□□ -0.13
TOP3A-216ENST00000583804 ZNF521Q96K83 1311 aa14.25□□□□□ -0.13
TOP3A-216ENST00000583804 GNAI1P63096 354 aa14.25□□□□□ -0.13
TOP3A-216ENST00000583804 SF3B2Q13435 895 aaKnown RBP14.25□□□□□ -0.13
TOP3A-216ENST00000583804 TTC5Q8N0Z6 440 aa14.25□□□□□ -0.13
TOP3A-216ENST00000583804 CFAP44Q96MT7 982 aa14.25□□□□□ -0.13
TOP3A-216ENST00000583804 SPINK5Q9NQ38 1064 aaPredicted RBP14.25□□□□□ -0.13
TOP3A-216ENST00000583804 ATG3Q9NT62 314 aa14.25□□□□□ -0.13
TOP3A-216ENST00000583804 IFT57Q9NWB7 429 aa14.25□□□□□ -0.13
TOP3A-216ENST00000583804 APBA3O96018 575 aa14.24□□□□□ -0.13
TOP3A-216ENST00000583804 MRC1P22897 1456 aa14.23□□□□□ -0.13
TOP3A-216ENST00000583804 IL16Q14005 1332 aa14.23□□□□□ -0.13
TOP3A-216ENST00000583804 CHL1O00533 1208 aa14.23□□□□□ -0.13
TOP3A-216ENST00000583804 KCNQ3O43525 872 aa14.23□□□□□ -0.13
TOP3A-216ENST00000583804 ZNF790Q6PG37 636 aa14.23□□□□□ -0.13
TOP3A-216ENST00000583804 SMARCC1Q92922 1105 aaPredicted RBP14.23□□□□□ -0.13
TOP3A-216ENST00000583804 ITGB4P16144 1822 aa14.23□□□□□ -0.13
TOP3A-216ENST00000583804 VIRMAQ69YN4 1812 aaKnown RBP14.23□□□□□ -0.13
TOP3A-216ENST00000583804 NHSQ6T4R5 1651 aa14.23□□□□□ -0.13
TOP3A-216ENST00000583804 SBF2Q86WG5 1849 aa14.22□□□□□ -0.13
TOP3A-216ENST00000583804 PTCD1O75127 700 aaKnown RBP14.22□□□□□ -0.13
TOP3A-216ENST00000583804 ZNF853P0CG23 659 aa14.22□□□□□ -0.13
TOP3A-216ENST00000583804 PELP1Q8IZL8 1130 aaKnown RBP14.22□□□□□ -0.13
TOP3A-216ENST00000583804 RBM42Q9BTD8 480 aaKnown RBP14.22□□□□□ -0.13
TOP3A-216ENST00000583804 MYH16Q9H6N6 1097 aa14.22□□□□□ -0.13
TOP3A-216ENST00000583804 MBIPQ9NS73 344 aa14.22□□□□□ -0.13
TOP3A-216ENST00000583804 BABAM1Q9NWV8 329 aa14.22□□□□□ -0.13
TOP3A-216ENST00000583804 E9PSI1 815 aa14.21□□□□□ -0.13
TOP3A-216ENST00000583804 TSR2Q969E8 191 aaKnown RBP14.21□□□□□ -0.13
TOP3A-216ENST00000583804 PALLDQ8WX93 1383 aa14.2□□□□□ -0.14
TOP3A-216ENST00000583804 SLFN5Q08AF3 891 aa14.2□□□□□ -0.14
TOP3A-216ENST00000583804 SIPA1L3O60292 1781 aaPredicted RBP14.19□□□□□ -0.14
TOP3A-216ENST00000583804 CCDC125Q86Z20 511 aa14.19□□□□□ -0.14
TOP3A-216ENST00000583804 ZNF496Q96IT1 587 aaPredicted RBP14.19□□□□□ -0.14
TOP3A-216ENST00000583804 FMNL2Q96PY5 1086 aa14.19□□□□□ -0.14
TOP3A-216ENST00000583804 BTAF1O14981 1849 aa14.19□□□□□ -0.14
TOP3A-216ENST00000583804 EIF4A1P60842 406 aaKnown RBP14.18□□□□□ -0.14
TOP3A-216ENST00000583804 UPF1Q92900 1129 aaKnown RBP eCLIP14.18□□□□□ -0.14
TOP3A-216ENST00000583804 FANCIQ9NVI1 1328 aa14.18□□□□□ -0.14
TOP3A-216ENST00000583804 EP400Q96L91 3159 aa14.18□□□□□ -0.14
TOP3A-216ENST00000583804 LOC102724428A0A0B4J2F2 783 aa14.18□□□□□ -0.14
TOP3A-216ENST00000583804 BAG6P46379 1132 aa14.18□□□□□ -0.14
TOP3A-216ENST00000583804 SIK1P57059 783 aa14.18□□□□□ -0.14
TOP3A-216ENST00000583804 EN1Q05925 392 aaPredicted RBP14.18□□□□□ -0.14
TOP3A-216ENST00000583804 ELL2O00472 640 aaPredicted RBP14.17□□□□□ -0.14
TOP3A-216ENST00000583804 PLSCR1O15162 318 aa14.17□□□□□ -0.14
TOP3A-216ENST00000583804 ATP6V1AP38606 617 aa14.17□□□□□ -0.14
TOP3A-216ENST00000583804 KCNQ4P56696 695 aa14.17□□□□□ -0.14
TOP3A-216ENST00000583804 DEFB132Q7Z7B7 95 aa14.17□□□□□ -0.14
TOP3A-216ENST00000583804 CCNL1Q9UK58 526 aaPredicted RBP14.17□□□□□ -0.14
TOP3A-216ENST00000583804 EXOSC9Q06265 439 aaKnown RBP14.16□□□□□ -0.14
TOP3A-216ENST00000583804 KRT24Q2M2I5 525 aa14.16□□□□□ -0.14
TOP3A-216ENST00000583804 HEG1Q9ULI3 1381 aa14.16□□□□□ -0.14
TOP3A-216ENST00000583804 SNRPA1P09661 255 aaKnown RBP14.15□□□□□ -0.14
TOP3A-216ENST00000583804 TXNRD1Q16881 649 aa14.15□□□□□ -0.14
TOP3A-216ENST00000583804 DUSP27Q5VZP5 1158 aa14.15□□□□□ -0.14
TOP3A-216ENST00000583804 C8orf58Q8NAV2 365 aa14.15□□□□□ -0.14
TOP3A-216ENST00000583804 SLC4A9Q96Q91 983 aa14.15□□□□□ -0.14
TOP3A-216ENST00000583804 TNS1Q9HBL0 1735 aaKnown RBP14.15□□□□□ -0.14
TOP3A-216ENST00000583804 KDM3BQ7LBC6 1761 aa14.14□□□□□ -0.15
TOP3A-216ENST00000583804 KCPQ6ZWJ8 1503 aa14.14□□□□□ -0.15
TOP3A-216ENST00000583804 GIGYF1O75420 1035 aaPredicted RBP14.14□□□□□ -0.15
TOP3A-216ENST00000583804 EZH2Q15910 746 aaKnown RBP14.14□□□□□ -0.15
TOP3A-216ENST00000583804 DNAJC10Q8IXB1 793 aa14.14□□□□□ -0.15
TOP3A-216ENST00000583804 TRMT2AQ8IZ69 625 aaKnown RBP14.14□□□□□ -0.15
TOP3A-216ENST00000583804 PAPPAQ13219 1627 aa14.14□□□□□ -0.15
TOP3A-216ENST00000583804 PRAMEF22A3QJZ6 481 aa14.13□□□□□ -0.15
TOP3A-216ENST00000583804 ITPK1Q13572 414 aa14.13□□□□□ -0.15
TOP3A-216ENST00000583804 SLC27A3Q5K4L6 730 aa14.13□□□□□ -0.15
TOP3A-216ENST00000583804 VSIG10Q8N0Z9 540 aa14.13□□□□□ -0.15
TOP3A-216ENST00000583804 PROM2Q8N271 834 aa14.13□□□□□ -0.15
TOP3A-216ENST00000583804 CAMKK2Q96RR4 588 aa14.13□□□□□ -0.15
TOP3A-216ENST00000583804 EIF2S2P20042 333 aaKnown RBP14.12□□□□□ -0.15
TOP3A-216ENST00000583804 TWISTNBQ3B726 338 aaPredicted RBP14.12□□□□□ -0.15
TOP3A-216ENST00000583804 TSPYL6Q8N831 410 aa14.12□□□□□ -0.15
TOP3A-216ENST00000583804 NECTIN2Q92692 538 aa14.12□□□□□ -0.15
TOP3A-216ENST00000583804 TEX13AQ9BXU3 409 aaPredicted RBP14.12□□□□□ -0.15
TOP3A-216ENST00000583804 USP16Q9Y5T5 823 aa14.12□□□□□ -0.15
TOP3A-216ENST00000583804 STARD3NLO95772 234 aa14.12□□□□□ -0.15
TOP3A-216ENST00000583804 LRRC4BQ9NT99 713 aa14.12□□□□□ -0.15
TOP3A-216ENST00000583804 UBR2Q8IWV8 1755 aa14.11□□□□□ -0.15
TOP3A-216ENST00000583804 SUPT16HQ9Y5B9 1047 aaKnown RBP14.11□□□□□ -0.15
TOP3A-216ENST00000583804 VAMP4O75379 141 aa14.1□□□□□ -0.15
TOP3A-216ENST00000583804 HDGFL1Q5TGJ6 251 aa14.1□□□□□ -0.15
TOP3A-216ENST00000583804 LINC00116Q8NCU8 138 aa14.1□□□□□ -0.15
TOP3A-216ENST00000583804 TCERG1O14776 1098 aaKnown RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms